RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1105232 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5315472 5315472 PRJNA1105232_S_NODE_325_length_826_cov_25.505792_g142_i0 PRJNA1105232 325 826 25.505792 210.67784192 Vannella ebro 207334 Discosea other_Eukaryota 675 0   NTclustered gi|33946344|gb|AY294151.1| 207334 g142 i0 82.17 96.0520581113801 802 127 96 14 33 826 1137 344 Vannella ebro actin mRNA, complete cds blastn 79339 675 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella ebro
15515249 15515249 PRJNA1105232_S_NODE_9573_length_205_cov_7.544872_g9357_i0 PRJNA1105232 9573 205 7.544872 15.4669876 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 119 1.74e-22   NTclustered gi|470458047|ref|XM_004341152.1| 1257118 g9357 i0 90.11 12.3609756097561 91 9 44 0 1 91 141 231 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_335920), partial mRNA blastn 2534 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19338455 19338455 PRJNA1105232_S_NODE_8856_length_212_cov_0.957055_g8640_i0 PRJNA1105232 8856 212 0.957055 2.0289566 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 3.03e-20   NTclustered gi|470526273|ref|XM_004356675.1| 1257118 g8640 i0 94.444 2.41981132075472 72 4 34 0 130 201 408 337 Acanthamoeba castellanii str. Neff ribosomal protein L19e, putative (ACA1_174910), partial mRNA blastn 513 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;