RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1105232 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1487298 1487298 PRJNA1105232_S_NODE_9242_length_208_cov_2.672956_g9026_i0 PRJNA1105232 9242 208 2.672956 5.55974848 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 331 2.0900000000000002e-86   NTclustered gi|224996436|gb|FJ654268.1| 188950 g9026 i0 94.931 2.09134615384615 217 2 100 1 1 208 122 338 Bodomorpha minima 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 435 331 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
4039384 4039384 PRJNA1105232_S_NODE_7704_length_223_cov_6.816092_g7488_i0 PRJNA1105232 7704 223 6.816092 15.19988516 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 412 7.88e-111   NTclustered gi|238617602|gb|FJ973377.1| 188950 g7488 i0 100 57.0807174887892 223 0 100 0 1 223 2911 2689 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 12729 412 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
6590681 6590681 PRJNA1105232_S_NODE_3566_length_303_cov_9.500000_g3350_i0 PRJNA1105232 3566 303 9.5 28.785 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 514 2.99e-141   NTclustered gi|238617602|gb|FJ973377.1| 188950 g3350 i0 100 91.6039603960396 278 0 92 0 26 303 39 316 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 27756 514 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
11691312 11691312 PRJNA1105232_S_NODE_9130_length_209_cov_2.481250_g8914_i0 PRJNA1105232 9130 209 2.48125 5.1858125 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 387 4.42e-103   NTclustered gi|33309639|gb|AF411276.1| 188950 g8914 i0 100 80.8133971291866 209 0 100 0 1 209 1676 1468 Bodomorpha minima 18S ribosomal RNA gene, complete sequence blastn 16890 387 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
15048101 15048101 PRJNA1105232_S_NODE_1552_length_412_cov_5.793388_g1337_i0 PRJNA1105232 1552 412 5.793388 23.86875856 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 761 0   NTclustered gi|33309639|gb|AF411276.1| 188950 g1337 i0 100 100.502427184466 412 0 100 0 1 412 1034 623 Bodomorpha minima 18S ribosomal RNA gene, complete sequence blastn 41407 761 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
16789700 16789700 PRJNA1105232_S_NODE_1154_length_462_cov_10.220339_g940_i0 PRJNA1105232 1154 462 10.220339 47.21796618 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 289 3.14e-73   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g940 i0 82.222 38.5476190476191 360 40 77 16 106 462 4039 3701 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 17809 289 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
24438489 24438489 PRJNA1105232_S_NODE_14460_length_172_cov_4.056911_g14244_i0 PRJNA1105232 14460 172 4.056911 6.97788692 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 318 1.2899999999999999e-82   NTclustered gi|238617602|gb|FJ973377.1| 188950 g14244 i0 100 1 172 0 100 0 1 172 2205 2376 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 172 318 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;