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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA1105232 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2763259 2763259 PRJNA1105232_S_NODE_11703_length_189_cov_1.114286_g11487_i0 PRJNA1105232 11703 189 1.114286 2.10600054 Chlamydomonas cribrum 69356 Plants Plants 93.5 9.56e-15   NTclustered gi|1483735093|dbj|LC380266.1| 69356 g11487 i0 87.5 38.7248677248677 80 10 42 0 1 80 372 293 Chlamydomonas cribrum SAG 13.72 chloroplast atpB gene for ATP synthase beta-subunit, partial cds blastn 7319 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas cribrum
2763314 2763314 PRJNA1105232_S_NODE_7943_length_221_cov_1.668605_g7727_i0 PRJNA1105232 7943 221 1.668605 3.68761705 Monoraphidium neglectum 145388 Plants Plants 104 5.33e-18   NTclustered gi|926774775|ref|XM_014040408.1| 145388 g7727 i0 79.73 12.7013574660633 148 26 66 4 1 146 394 539 Monoraphidium neglectum 60S ribosomal protein L10 mRNA blastn 2807 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4039344 4039344 PRJNA1105232_S_NODE_16344_length_165_cov_1.344828_g16128_i0 PRJNA1105232 16344 165 1.344828 2.2189662 Chlorella variabilis 554065 Plants Plants 52.8 0.014   NTclustered gi|552824771|ref|XM_005846606.1| 554065 g16128 i0 100 0.16969696969697 28 0 17 0 122 149 2148 2175 Chlorella variabilis hypothetical protein (CHLNCDRAFT_53051) mRNA, complete cds blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
5315458 5315458 PRJNA1105232_S_NODE_15545_length_168_cov_0.873950_g15329_i0 PRJNA1105232 15545 168 0.87395 1.468236 Trebouxia sp. SL0000003 3350044 Plants Plants 163 6.25e-36   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g15329 i0 95.146 6.69642857142857 103 5 61 0 19 121 1365587 1365689 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 1125 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
9140197 9140197 PRJNA1105232_S_NODE_3308_length_311_cov_4.118321_g3092_i0 PRJNA1105232 3308 311 4.118321 12.80797831 Trebouxia lynnae 1825957 Plants Plants 67.6 1.04e-6   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g3092 i0 87.719 0.183279742765273 57 7 18 0 102 158 13045 13101 Trebouxia sp. TR9 mitochondrion, complete genome blastn 57 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
15048103 15048103 PRJNA1105232_S_NODE_1612_length_407_cov_7.924581_g1397_i0 PRJNA1105232 1612 407 7.924581 32.25304467 Trebouxiophyceae 75966 Plants Plants 63.9 1.8e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g1397 i0 95 16.0884520884521 40 2 10 0 91 130 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6548 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
19338399 19338399 PRJNA1105232_S_NODE_12636_length_183_cov_1.164179_g12420_i0 PRJNA1105232 12636 183 1.164179 2.13044757 Koliella longiseta 33092 Plants Plants 87.9 4.27e-13   NTclustered gi|371782132|emb|HE610164.1| 33092 g12420 i0 88.889 28.9398907103825 72 7 39 1 45 115 76 5 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 5296 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
24438530 24438530 PRJNA1105232_S_NODE_7940_length_221_cov_1.813953_g7724_i0 PRJNA1105232 7940 221 1.813953 4.00883613 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082235889|ref|XM_001700244.2| 3055 g7724 i0 100 0.135746606334842 30 0 14 0 76 105 2266 2295 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g009400v5), mRNA blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;