RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 4

tax_superkingdom 1

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA1105232 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212574 212574 PRJNA1105232_S_NODE_3681_length_299_cov_1.628000_g3465_i0 PRJNA1105232 3681 299 1.628 4.86772 Plasmodium cynomolgi 5827 SAR_Eukaryotes SAR_Eukaryotes 189 2.0299999999999993e-43   NTclustered gi|457872809|ref|XM_004223276.1| 1120755 g3465 i0 79.137 2.42809364548495 278 54 92 4 14 289 342 67 Plasmodium cynomolgi strain B histone H2A (PCYB_113970) mRNA, complete cds blastn 726 189 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium cynomolgi
1487298 1487298 PRJNA1105232_S_NODE_9242_length_208_cov_2.672956_g9026_i0 PRJNA1105232 9242 208 2.672956 5.55974848 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 331 2.0900000000000002e-86   NTclustered gi|224996436|gb|FJ654268.1| 188950 g9026 i0 94.931 2.09134615384615 217 2 100 1 1 208 122 338 Bodomorpha minima 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 435 331 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
2295838 2295838 PRJNA1105232_S_NODE_3042_length_322_cov_2.274725_g2826_i0 PRJNA1105232 3042 322 2.274725 7.3246145 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 158 6.23e-34   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g2826 i0 79.149 49.6304347826087 235 43 72 5 1 232 450 219 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 15981 158 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
4039384 4039384 PRJNA1105232_S_NODE_7704_length_223_cov_6.816092_g7488_i0 PRJNA1105232 7704 223 6.816092 15.19988516 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 412 7.88e-111   NTclustered gi|238617602|gb|FJ973377.1| 188950 g7488 i0 100 57.0807174887892 223 0 100 0 1 223 2911 2689 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 12729 412 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
6590681 6590681 PRJNA1105232_S_NODE_3566_length_303_cov_9.500000_g3350_i0 PRJNA1105232 3566 303 9.5 28.785 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 514 2.99e-141   NTclustered gi|238617602|gb|FJ973377.1| 188950 g3350 i0 100 91.6039603960396 278 0 92 0 26 303 39 316 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 27756 514 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
7865314 7865314 PRJNA1105232_S_NODE_1987_length_377_cov_3.326220_g1771_i0 PRJNA1105232 1987 377 3.32622 12.5398494 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 220 9.3e-53   NTclustered gi|1027955952|ref|XM_016798456.1| 31271 g1771 i0 77.6 19.790450928382 375 76 98 8 5 375 917 547 Plasmodium chabaudi chabaudi rRNA 2'-O-methyltransferase fibrillarin, putative (PCHAS_1035900), partial mRNA blastn 7461 220 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
7865358 7865358 PRJNA1105232_S_NODE_9247_length_208_cov_2.459119_g9031_i0 PRJNA1105232 9247 208 2.459119 5.11496752 uncultured dinoflagellate 187300 SAR_Eukaryotes SAR_Eukaryotes 128 2.94e-25   NTclustered gi|309254621|gb|GU554557.1| 187300 g9031 i0 82.313 3.62019230769231 147 26 71 0 4 150 357 211 uncultured dinoflagellate clone AP_1061048708622 mRNA sequence blastn 753 128 1 Eukaryota Sar     Dinophyceae       uncultured dinoflagellate
9140206 9140206 PRJNA1105232_S_NODE_5848_length_249_cov_2.860000_g5632_i0 PRJNA1105232 5848 249 2.86 7.1214 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 148 2.7899999999999996e-31   NTclustered gi|675169594|ref|XM_008895434.1| 761204 g5632 i0 79.245 3.71084337349398 212 44 85 0 35 246 482 271 Phytophthora parasitica INRA-310 40S ribosomal protein S16 mRNA blastn 924 148 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
9140208 9140208 PRJNA1105232_S_NODE_6348_length_241_cov_2.369792_g6132_i0 PRJNA1105232 6348 241 2.369792 5.71119872 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 174 4.4399999999999997e-39   NTclustered gi|124804503|ref|XM_001347986.1| 36329 g6132 i0 84.659 48.6182572614108 176 25 73 1 37 212 1551 1378 Plasmodium falciparum 3D7 heat shock protein 70 (PF3D7_1134000), partial mRNA blastn 11717 174 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
10416014 10416014 PRJNA1105232_S_NODE_169_length_1376_cov_16.330821_g15_i0 PRJNA1105232 169 1376 16.330821 224.71209696 Loxophyllum shini 1346494 SAR_Eukaryotes SAR_Eukaryotes 289 9.87e-73   NTclustered gi|375305428|gb|JF975388.1| 1346494 g15 i0 79.952 22.984011627907 419 63 30 17 962 1376 1224 823 Loxophyllum shini isolate PHB2007053101 28S ribosomal RNA gene, partial sequence blastn 31626 289 1 Eukaryota Sar   Ciliophora Litostomatea Pleurostomatida Litonotidae Loxophyllum Loxophyllum shini
11691288 11691288 PRJNA1105232_S_NODE_3810_length_295_cov_1.463415_g3594_i0 PRJNA1105232 3810 295 1.463415 4.31707425 Colpodella angusta 1541798 SAR_Eukaryotes SAR_Eukaryotes 187 7.19e-43   NTclustered gi|972268869|gb|KU159286.1| 1541798 g3594 i0 81.938 57.6677966101695 227 36 76 5 71 295 3696 3919 Colpodella angusta 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17012 187 1 Eukaryota Sar         Colpodellaceae Colpodella Colpodella angusta
11691312 11691312 PRJNA1105232_S_NODE_9130_length_209_cov_2.481250_g8914_i0 PRJNA1105232 9130 209 2.48125 5.1858125 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 387 4.42e-103   NTclustered gi|33309639|gb|AF411276.1| 188950 g8914 i0 100 80.8133971291866 209 0 100 0 1 209 1676 1468 Bodomorpha minima 18S ribosomal RNA gene, complete sequence blastn 16890 387 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
14241422 14241422 PRJNA1105232_S_NODE_4832_length_268_cov_49.675799_g4616_i0 PRJNA1105232 4832 268 49.675799 133.13114132 Phalacroma oxytoxoides 447216 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|2742502725|gb|PP905714.1| 447216 g4616 i0 100 0.208955223880597 28 0 10 0 1 28 1198 1225 Phalacroma oxytoxoides isolate PhaFC3 small subunit ribosomal RNA gene, partial sequence blastn 56 52.8 1 Eukaryota Sar     Dinophyceae Dinophysales Dinophysaceae Phalacroma Phalacroma oxytoxoides
15048101 15048101 PRJNA1105232_S_NODE_1552_length_412_cov_5.793388_g1337_i0 PRJNA1105232 1552 412 5.793388 23.86875856 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 761 0   NTclustered gi|33309639|gb|AF411276.1| 188950 g1337 i0 100 100.502427184466 412 0 100 0 1 412 1034 623 Bodomorpha minima 18S ribosomal RNA gene, complete sequence blastn 41407 761 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
16789700 16789700 PRJNA1105232_S_NODE_1154_length_462_cov_10.220339_g940_i0 PRJNA1105232 1154 462 10.220339 47.21796618 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 289 3.14e-73   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g940 i0 82.222 38.5476190476191 360 40 77 16 106 462 4039 3701 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 17809 289 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
24438489 24438489 PRJNA1105232_S_NODE_14460_length_172_cov_4.056911_g14244_i0 PRJNA1105232 14460 172 4.056911 6.97788692 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 318 1.2899999999999999e-82   NTclustered gi|238617602|gb|FJ973377.1| 188950 g14244 i0 100 1 172 0 100 0 1 172 2205 2376 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 172 318 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;