contig_metadata
7 rows where analysis = "blastn", bioproject = "PRJNA1105232" and tax_clade = "FCB group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1487255 | 1487255 | PRJNA1105232_S_NODE_15722_length_167_cov_1.762712_g15506_i0 | PRJNA1105232 | 15722 | 167 | 1.762712 | 2.94372904 | Chryseobacterium scophthalmum | 59733 | Bacteria | Bacteria | 176 | 7.969999999999999e-40 | NTclustered | gi|2653363380|gb|CP142423.1| | 59733 | g15506 | i0 | 85.629 | 1 | 167 | 24 | 100 | 0 | 1 | 167 | 4578219 | 4578053 | Chryseobacterium scophthalmum strain JUb44 chromosome | blastn | 167 | 176 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Chryseobacterium | Chryseobacterium scophthalmum | |
| 9948582 | 9948582 | PRJNA1105232_S_NODE_13108_length_180_cov_1.572519_g12892_i0 | PRJNA1105232 | 13108 | 180 | 1.572519 | 2.8305341999999998 | Bacteroides | 816 | Bacteria | Bacteria | 52.8 | 0.015 | NTclustered | gi|2202814649|gb|CP092641.1| | 818 | g12892 | i0 | 96.875 | 6.04444444444444 | 32 | 0 | 18 | 1 | 106 | 137 | 3950871 | 3950901 | Bacteroides thetaiotaomicron strain VPI 5482 chromosome, complete genome | blastn | 1088 | 52.8 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidaceae | Bacteroides | Bacteroides thetaiotaomicron | |
| 12499241 | 12499241 | PRJNA1105232_S_NODE_13750_length_176_cov_2.047244_g13534_i0 | PRJNA1105232 | 13750 | 176 | 2.047244 | 3.60314944 | Fluviicola | 332102 | Bacteria | Bacteria | 243 | 8.21e-60 | NTclustered | gi|470488043|ref|NR_076848.1| | 191579 | g13534 | i0 | 91.477 | 13.9375 | 176 | 15 | 100 | 0 | 1 | 176 | 378 | 203 | Fluviicola taffensis strain RW262 23S ribosomal RNA gene, complete sequence | blastn | 2453 | 243 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Crocinitomicaceae | Fluviicola | Fluviicola taffensis | |
| 16322922 | 16322922 | PRJNA1105232_S_NODE_13453_length_178_cov_1.503876_g13237_i0 | PRJNA1105232 | 13453 | 178 | 1.503876 | 2.67689928 | Chryseobacterium | 59732 | Bacteria | Bacteria | 324 | 2.89e-84 | NTclustered | gi|1494289966|gb|CP033070.1| | 2478663 | g13237 | i0 | 99.438 | 455.808988764045 | 178 | 1 | 100 | 0 | 1 | 178 | 1907515 | 1907692 | Chryseobacterium sp. 3008163 chromosome, complete genome | blastn | 81134 | 324 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Chryseobacterium | Chryseobacterium sp. 3008163 | |
| 16789704 | 16789704 | PRJNA1105232_S_NODE_13414_length_178_cov_2.015504_g13198_i0 | PRJNA1105232 | 13414 | 178 | 2.015504 | 3.58759712 | Flavobacterium sangjuense | 2518177 | Bacteria | Bacteria | 113 | 6.81e-21 | NTclustered | gi|1616390602|gb|CP038810.1| | 2518177 | g13198 | i0 | 78.09 | 12.8202247191011 | 178 | 39 | 100 | 0 | 1 | 178 | 3059877 | 3059700 | Flavobacterium sangjuense strain GS03 chromosome, complete genome | blastn | 2282 | 113 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium sangjuense | |
| 16789743 | 16789743 | PRJNA1105232_S_NODE_494_length_645_cov_3.491611_g299_i0 | PRJNA1105232 | 494 | 645 | 3.491611 | 22.52089095 | Chryseobacterium sp. ZHDP1 | 2838877 | Bacteria | Bacteria | 1120 | 0 | NTclustered | gi|2046786976|gb|CP075682.1| | 2838877 | g299 | i0 | 97.984 | 537.556589147287 | 645 | 13 | 100 | 0 | 1 | 645 | 1906803 | 1906159 | Chryseobacterium sp. ZHDP1 chromosome, complete genome | blastn | 346724 | 1120 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Chryseobacterium | Chryseobacterium sp. ZHDP1 | |
| 21422425 | 21422425 | PRJNA1105232_S_NODE_10857_length_195_cov_1.424658_g10641_i0 | PRJNA1105232 | 10857 | 195 | 1.424658 | 2.7780831 | Fluviicola | 332102 | Bacteria | Bacteria | 350 | 5.34e-92 | NTclustered | gi|470488043|ref|NR_076848.1| | 191579 | g10641 | i0 | 98.974 | 263.189743589744 | 195 | 2 | 100 | 0 | 1 | 195 | 1469 | 1275 | Fluviicola taffensis strain RW262 23S ribosomal RNA gene, complete sequence | blastn | 51322 | 350 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Crocinitomicaceae | Fluviicola | Fluviicola taffensis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;