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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1104180" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1104180 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2295683 2295683 PRJNA1104180_P_NODE_15102_length_277_cov_1.171569_g14960_i0 PRJNA1104180 15102 277 1.171569 3.24524613 Archaea 2157 Archaea Archaea 507 4.53e-139   NTclustered gi|42557759|emb|AJ627422.1| 29281 g14960 i0 99.639 44.4187725631769 277 1 100 0 1 277 42070 42346 Uncultured crenarchaeote genomic fragment 54d9 blastn 12304 507 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
5315237 5315237 PRJNA1104180_P_NODE_20985_length_250_cov_0.870056_g20842_i0 PRJNA1104180 20985 250 0.870056 2.17514 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 440 4.1399999999999976e-119   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g20842 i0 98.4 1 250 4 100 0 1 250 2806076 2806325 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 250 440 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
12966199 12966199 PRJNA1104180_P_NODE_21191_length_249_cov_1.750000_g21048_i0 PRJNA1104180 21191 249 1.75 4.3575 uncultured archaeon 115547 Archaea Archaea 313 9.359999999999999e-81   NTclustered gi|765560194|gb|KP308695.1| 115547 g21048 i0 89.6 5.99598393574297 250 21 99 5 4 249 2946 3194 Uncultured archaeon clone RBG_19_scaffold_31256 genomic sequence blastn 1493 313 1 Archaea               uncultured archaeon
23164626 23164626 PRJNA1104180_P_NODE_19799_length_252_cov_1.720670_g19656_i0 PRJNA1104180 19799 252 1.72067 4.3360884 Halorubrum sp. BOL3-1 2497325 Archaea Archaea 206 1.66e-48   NTclustered gi|1562112829|gb|CP034690.1| 2497325 g19656 i0 81.781 0.98015873015873 247 43 98 2 5 250 9040 8795 Halorubrum sp. BOL3-1 plasmid p13, complete sequence blastn 247 206 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. BOL3-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;