RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1104180" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1104180 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2295723 2295723 PRJNA1104180_P_NODE_19662_length_253_cov_1.427778_g19519_i0 PRJNA1104180 19662 253 1.427778 3.61227834 Candidatus Electrothrix 1859128 Bacteria Bacteria 207 4.63e-49   NTclustered gi|2755823080|gb|CP159373.1| 3062594 g19519 i0 81.496 2.96837944664032 254 45 100 2 1 253 5056294 5056546 MAG: Candidatus Electrothrix aestuarii isolate Rat1 chromosome, complete genome blastn 751 207 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Candidatus Electrothrix Candidatus Electrothrix aestuarii
11223762 11223762 PRJNA1104180_P_NODE_6389_length_376_cov_1.465347_g6247_i0 PRJNA1104180 6389 376 1.465347 5.50970472 Pseudomonadati 3379134 Bacteria Bacteria 150 1.23e-31   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g6247 i0 77.432 34.1622340425532 257 54 68 4 122 376 1711904 1711650 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 12845 150 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
19338143 19338143 PRJNA1104180_P_NODE_18396_length_259_cov_1.392473_g18254_i0 PRJNA1104180 18396 259 1.392473 3.60650507 Desulfococcus multivorans 897 Bacteria Bacteria 180 1.04e-40   NTclustered gi|84616844|emb|CT009609.1| 897 g18254 i0 85 13.2895752895753 180 24 69 3 1 179 25361 25538 Desulfococcus multivorans vrl island blastn 3442 180 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfococcus Desulfococcus multivorans
19338179 19338179 PRJNA1104180_P_NODE_21096_length_250_cov_0.870056_g20953_i0 PRJNA1104180 21096 250 0.870056 2.17514 uncultured Desulfobacterium sp. 201089 Bacteria Bacteria 361 3.31e-95   NTclustered gi|308273377|emb|FR695874.1| 201089 g20953 i0 93.416 3.564 243 16 97 0 1 243 34984 35226 Uncultured Desulfobacterium sp. genomic DNA, clone SelH_gw24b_gw46b blastn 891 361 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;