RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1104180" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 2 ✖

bioproject 1

  • PRJNA1104180 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2295683 2295683 PRJNA1104180_P_NODE_15102_length_277_cov_1.171569_g14960_i0 PRJNA1104180 15102 277 1.171569 3.24524613 Archaea 2157 Archaea Archaea 507 4.53e-139   NTclustered gi|42557759|emb|AJ627422.1| 29281 g14960 i0 99.639 44.4187725631769 277 1 100 0 1 277 42070 42346 Uncultured crenarchaeote genomic fragment 54d9 blastn 12304 507 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
5315237 5315237 PRJNA1104180_P_NODE_20985_length_250_cov_0.870056_g20842_i0 PRJNA1104180 20985 250 0.870056 2.17514 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 440 4.1399999999999976e-119   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g20842 i0 98.4 1 250 4 100 0 1 250 2806076 2806325 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 250 440 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;