RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1104180" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1104180 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2763099 2763099 PRJNA1104180_P_NODE_22203_length_248_cov_0.880000_g22060_i0 PRJNA1104180 22203 248 0.88 2.1824 Cunea russae 2720067 Discosea other_Eukaryota 451 1.89e-122   NTclustered gi|1824670306|gb|MN317566.1| 2720067 g22060 i0 99.597 4 248 0 100 1 1 248 668 914 Cunea russae strain RC CCMAm 0458 clone 4 18S ribosomal RNA gene, partial sequence blastn 992 451 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Cunea Cunea russae
5315253 5315253 PRJNA1104180_P_NODE_2225_length_585_cov_11.746094_g2084_i0 PRJNA1104180 2225 585 11.746094 68.7146499 Euamoebida sp. MK-2011 1105346 Tubulinea other_Eukaryota 833 0   NTclustered gi|354720327|gb|HQ687486.1| 1105346 g2084 i0 92.491 73.9470085470086 586 38 99 5 1 584 602 1183 Tubulinida sp. MK-2011 strain 4730 small subunit ribosomal RNA gene, partial sequence blastn 43259 833 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida     Euamoebida sp. MK-2011
9139961 9139961 PRJNA1104180_P_NODE_21648_length_249_cov_0.875000_g21505_i0 PRJNA1104180 21648 249 0.875 2.17875 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 252 2.07e-62   NTclustered gi|300078497|gb|GU001159.1| 200886 g21505 i0 87.168 52.1244979919679 226 23 90 5 4 226 2851 2629 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12979 252 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
20613634 20613634 PRJNA1104180_P_NODE_4597_length_429_cov_46.851124_g4455_i0 PRJNA1104180 4597 429 46.851124 200.99132196 Euamoebida sp. MK-2011 1105346 Tubulinea other_Eukaryota 695 0   NTclustered gi|354720327|gb|HQ687486.1| 1105346 g4455 i0 95.843 61.1095571095571 433 12 100 6 1 429 1308 1738 Tubulinida sp. MK-2011 strain 4730 small subunit ribosomal RNA gene, partial sequence blastn 26216 695 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida     Euamoebida sp. MK-2011
21422240 21422240 PRJNA1104180_P_NODE_14437_length_281_cov_0.990385_g14295_i0 PRJNA1104180 14437 281 0.990385 2.78298185 Physariida 5789 Evosea other_Eukaryota 124 5.41e-24   NTclustered gi|3185|emb|X60211.1| 5791 g14295 i0 84.496 13.8718861209964 129 17 46 3 154 281 233 359 P.polycephalum 26S rRNA blastn 3898 124 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
21889278 21889278 PRJNA1104180_P_NODE_4918_length_417_cov_1.241279_g4776_i0 PRJNA1104180 4918 417 1.241279 5.17613343 Centropyxis laevigata 318528 Tubulinea other_Eukaryota 765 0   NTclustered gi|61655689|gb|AY848965.1| 318528 g4776 i0 99.76 50.3669064748201 417 1 100 0 1 417 97 513 Centropyxis laevigata small subunit ribosomal RNA gene, partial sequence blastn 21003 765 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis laevigata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;