RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1103784" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1103784 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2762850 2762850 PRJNA1103784_P_NODE_4623_length_269_cov_3.030612_g4568_i0 PRJNA1103784 4623 269 3.030612 8.15234628 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 492 1.23e-134   NTclustered gi|238617602|gb|FJ973377.1| 188950 g4568 i0 99.628 38.5947955390335 269 1 100 0 1 269 2130 2398 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 10382 492 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
7864825 7864825 PRJNA1103784_P_NODE_3267_length_304_cov_2.121212_g3212_i0 PRJNA1103784 3267 304 2.121212 6.44848448 Cercomonas agilis 310805 SAR_Eukaryotes SAR_Eukaryotes 316 9.099999999999999e-82   NTclustered gi|58414956|gb|AY748813.1| 310805 g3212 i0 86.667 150.789473684211 285 38 94 0 3 287 285 1 Cercomonas agilis polyubiquitin (UBQ) gene, partial cds blastn 45840 316 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas agilis
21888966 21888966 PRJNA1103784_P_NODE_678_length_586_cov_2.479532_g624_i0 PRJNA1103784 678 586 2.479532 14.53005752 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 761 0   NTclustered gi|238617602|gb|FJ973377.1| 188950 g624 i0 90.033 73.0972696245734 602 41 99 16 1 585 1801 2400 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 42835 761 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;