RNAquarium Metadata Server
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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA1103784" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 24 ✖

bioproject 1

  • PRJNA1103784 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212169 212169 PRJNA1103784_P_NODE_4981_length_263_cov_1.589474_g4926_i0 PRJNA1103784 4981 263 1.589474 4.18031662 Oryza sativa 4530 Plants Plants 414 2.66e-111   NTclustered gi|32992879|dbj|AK107670.1| 39947 g4926 i0 95.057 39.4030418250951 263 13 100 0 1 263 1374 1636 Oryza sativa Japonica Group cDNA clone:002-131-H08, full insert sequence blastn 10363 414 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
1486779 1486779 PRJNA1103784_P_NODE_1922_length_377_cov_1.736842_g1867_i0 PRJNA1103784 1922 377 1.736842 6.54789434 Andropogon virgatus 2491225 Plants Plants 695 0   NTclustered gi|1524087539|gb|MH181223.1| 2491225 g1867 i0 100 194.48275862069 376 0 99 0 2 377 101146 100771 Andropogon virgatus isolate TK477 chloroplast, complete genome blastn 73320 695 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Andropogon Andropogon virgatus
1486829 1486829 PRJNA1103784_P_NODE_4782_length_266_cov_5.393782_g4727_i0 PRJNA1103784 4782 266 5.393782 14.34746012 Cryptomeria japonica 3369 Plants Plants 492 1.2099999999999999e-134   NTclustered gi|2571330970|ref|XR_009371277.1| 3369 g4727 i0 100 100 266 0 100 0 1 266 313 48 PREDICTED: Cryptomeria japonica 18S ribosomal RNA (LOC131873292), rRNA blastn 26600 492 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
1486881 1486881 PRJNA1103784_P_NODE_8022_length_233_cov_2.012500_g7967_i0 PRJNA1103784 8022 233 2.0125 4.689125 Oryza sativa 4530 Plants Plants 387 5.03e-103   NTclustered gi|32973086|dbj|AK063068.1| 39947 g7967 i0 96.567 3.17167381974249 233 8 100 0 1 233 715 483 Oryza sativa Japonica Group cDNA clone:001-110-G10, full insert sequence blastn 739 387 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
2295617 2295617 PRJNA1103784_P_NODE_3142_length_309_cov_1.805085_g3087_i0 PRJNA1103784 3142 309 1.805085 5.57771265 Eukaryota 2759 Plants Plants 211 4.5e-50   NTclustered gi|326521829|dbj|AK369289.1| 112509 g3087 i0 86.772 59.8155339805825 189 25 61 0 117 305 1195 1007 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F12 blastn 18483 213 0.990610328638498 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
2762903 2762903 PRJNA1103784_P_NODE_7803_length_241_cov_0.916667_g7748_i0 PRJNA1103784 7803 241 0.916667 2.20916747 Cucumis melo 3656 Plants Plants 172 1.6e-38   NTclustered gi|733578317|emb|LN713264.1| 3656 g7748 i0 82.927 1.70124481327801 205 22 84 6 39 240 5871736 5871542 Cucumis melo genomic chromosome, chr_10 blastn 410 172 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
3570719 3570719 PRJNA1103784_P_NODE_8163_length_218_cov_11.303448_g8108_i0 PRJNA1103784 8163 218 11.303448 24.64151664 Cupressaceae 3367 Plants Plants 401 1.6599999999999993e-107   NTclustered gi|2571330970|ref|XR_009371277.1| 3369 g8108 i0 100 99.5412844036697 217 0 99 0 2 218 1648 1432 PREDICTED: Cryptomeria japonica 18S ribosomal RNA (LOC131873292), rRNA blastn 21700 401 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
5315002 5315002 PRJNA1103784_P_NODE_3765_length_288_cov_1.246512_g3710_i0 PRJNA1103784 3765 288 1.246512 3.58995456 Hordeum vulgare 4513 Plants Plants 477 3.71e-130   NTclustered gi|326524316|dbj|AK369340.1| 112509 g3710 i0 96.528 93.8229166666667 288 10 100 0 1 288 1155 868 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2089H12 blastn 27021 477 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
6123236 6123236 PRJNA1103784_P_NODE_5605_length_251_cov_1.410112_g5550_i0 PRJNA1103784 5605 251 1.410112 3.53938112 Lolium 4520 Plants Plants 459 1.1499999999999996e-124   NTclustered gi|2922430418|ref|XR_011750348.1| 4522 g5550 i0 99.602 100.019920318725 251 1 100 0 1 251 27 277 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC139834652), rRNA blastn 25105 459 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
7397974 7397974 PRJNA1103784_P_NODE_5446_length_254_cov_1.364641_g5391_i0 PRJNA1103784 5446 254 1.364641 3.46618814 Fabaceae 3803 Plants Plants 448 2.5199999999999996e-121   NTclustered gi|1714054218|gb|MN244679.1| 126820 g5391 i0 98.425 99.2204724409449 254 4 100 0 1 254 4204 3951 Senna occidentalis isolate B small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25202 449 0.997772828507795 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Senna Senna occidentalis
8673425 8673425 PRJNA1103784_P_NODE_7927_length_238_cov_2.466667_g7872_i0 PRJNA1103784 7927 238 2.466667 5.87066746 root 1 Root_unresolved Root_unresolved 58.4 4.59e-4   NTclustered gi|2526028454|ref|XM_057560482.1| 34305 g7872 i0 100 1.76050420168067 31 0 13 0 4 34 297 267 PREDICTED: Lotus japonicus protein SRC1 (LOC130711042), mRNA blastn 419 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
9948338 9948338 PRJNA1103784_P_NODE_2108_length_364_cov_8.443299_g2053_i0 PRJNA1103784 2108 364 8.443299 30.73360836 Cunninghamia 25608 Plants Plants 673 0   NTclustered gi|152060717|gb|EF673736.1| 28977 g2053 i0 100 100 364 0 100 0 1 364 200 563 Cunninghamia lanceolata 18S ribosomal RNA gene, partial sequence blastn 36400 673 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cunninghamia Cunninghamia lanceolata
9948369 9948369 PRJNA1103784_P_NODE_7028_length_244_cov_1.730994_g6973_i0 PRJNA1103784 7028 244 1.730994 4.22362536 Magnoliopsida 3398 Plants Plants 451 1.86e-122   NTclustered gi|1829764937|ref|NC_046700.1| 4013 g6973 i0 100 197 244 0 100 0 1 244 108405 108162 Toxicodendron vernicifluum cultivar Dahongpao chloroplast, complete genome blastn 48068 451 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Anacardiaceae Toxicodendron Toxicodendron vernicifluum
10415514 10415514 PRJNA1103784_P_NODE_3229_length_306_cov_1.321888_g3174_i0 PRJNA1103784 3229 306 1.321888 4.04497728 Oryza sativa 4530 Plants Plants 405 1.9e-108   NTclustered gi|32972508|dbj|AK062490.1| 39947 g3174 i0 92.832 0.911764705882353 279 20 91 0 25 303 52 330 Oryza sativa Japonica Group cDNA clone:001-103-H06, full insert sequence blastn 279 405 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
10415566 10415566 PRJNA1103784_P_NODE_5489_length_253_cov_1.711111_g5434_i0 PRJNA1103784 5489 253 1.711111 4.32911083 Beta vulgaris 161934 Plants Plants 54.7 0.006   NTclustered gi|2518601700|ref|XM_048645242.2| 3555 g5434 i0 100 0.458498023715415 29 0 11 0 10 38 1010 982 PREDICTED: Beta vulgaris subsp. vulgaris hypothetical protein (LOC104892105), transcript variant X4, mRNA blastn 116 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Beta Beta vulgaris
11690890 11690890 PRJNA1103784_P_NODE_7950_length_237_cov_2.439024_g7895_i0 PRJNA1103784 7950 237 2.439024 5.78048688 Oryza sativa 4530 Plants Plants 294 3.2e-75   NTclustered gi|32993583|dbj|AK108374.1| 39947 g7895 i0 92.647 8.47257383966245 204 15 86 0 31 234 838 635 Oryza sativa Japonica Group cDNA clone:002-142-D11, full insert sequence blastn 2008 294 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
13773508 13773508 PRJNA1103784_P_NODE_3311_length_303_cov_1.278261_g3256_i0 PRJNA1103784 3311 303 1.278261 3.87313083 Cupressaceae 3367 Plants Plants 560 3.79e-155   NTclustered gi|2059415815|gb|MW354310.1| 3371 g3256 i0 100 99.8910891089109 303 0 100 0 1 303 18496 18798 Metasequoia glyptostroboides 5S ribosomal RNA (rrn5) gene, complete sequence; mitochondrial blastn 30267 560 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Metasequoia Metasequoia glyptostroboides
17597868 17597868 PRJNA1103784_P_NODE_434_length_714_cov_4.513261_g381_i0 PRJNA1103784 434 714 4.513261 32.22468354 Eukaryota 2759 Plants Plants 1122 0   NTclustered gi|150172490|emb|CU406894.1| 4529 g381 i0 95.098 4.98879551820728 714 31 99 3 1 712 732 21 Oryza rufipogon (W1943) cDNA clone: ORW1943C111D01, full insert sequence blastn 3562 1127 0.995563442768412 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
18063818 18063818 PRJNA1103784_P_NODE_3555_length_293_cov_1.740909_g3500_i0 PRJNA1103784 3555 293 1.740909 5.10086337 Oryza sativa 4530 Plants Plants 403 6.51e-108   NTclustered gi|32971027|dbj|AK061009.1| 39947 g3500 i0 91.724 91.3959044368601 290 24 99 0 1 290 837 1126 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 26779 403 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
18063830 18063830 PRJNA1103784_P_NODE_4395_length_274_cov_2.014925_g4340_i0 PRJNA1103784 4395 274 2.014925 5.5208945 Hordeum vulgare 4513 Plants Plants 431 2.769999999999999e-116   NTclustered gi|326524316|dbj|AK369340.1| 112509 g4340 i0 96.198 86.2627737226277 263 10 96 0 1 263 301 39 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2089H12 blastn 23636 431 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
18871775 18871775 PRJNA1103784_P_NODE_5175_length_259_cov_2.279570_g5120_i0 PRJNA1103784 5175 259 2.27957 5.9040863 Rosa 3764 Plants Plants 108 4.96e-19   NTclustered gi|2646229739|ref|XM_062139703.1| 74645 g5120 i0 80.714 27.8571428571429 140 25 54 2 121 259 876 1014 PREDICTED: Rosa rugosa heat shock protein 83 (LOC133713671), mRNA blastn 7215 108 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa rugosa
18871777 18871777 PRJNA1103784_P_NODE_615_length_612_cov_2.549165_g561_i0 PRJNA1103784 615 612 2.549165 15.6008898 Poaceae 4479 Plants Plants 56.5 0.005   NTclustered gi|2649483048|ref|XM_062341975.1| 29695 g561 i0 96.97 0.377450980392157 33 1 5 0 432 464 1512 1544 PREDICTED: Phragmites australis la-related protein 6B-like (LOC133900745), transcript variant X2, mRNA blastn 231 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phragmites Phragmites australis
21888918 21888918 PRJNA1103784_P_NODE_3118_length_310_cov_1.839662_g3063_i0 PRJNA1103784 3118 310 1.839662 5.7029522 Oryza sativa 4530 Plants Plants 459 1.46e-124   NTclustered gi|32994295|dbj|AK109086.1| 39947 g3063 i0 93.528 179.216129032258 309 18 99 2 1 308 1634 1941 Oryza sativa Japonica Group cDNA clone:002-154-H10, full insert sequence blastn 55557 459 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
24438057 24438057 PRJNA1103784_P_NODE_5880_length_250_cov_0.870056_g5825_i0 PRJNA1103784 5880 250 0.870056 2.17514 Cannabis sativa 3483 Plants Plants 52.8 0.023   NTclustered gi|2748541027|gb|CP158645.1| 3483 g5825 i0 100 0.112 28 0 11 0 5 32 73695926 73695899 Cannabis sativa cultivar ERBxHO40_23 chromosome 2 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;