RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1103784" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1103784 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212199 212199 PRJNA1103784_P_NODE_6601_length_246_cov_2.289017_g6546_i0 PRJNA1103784 6601 246 2.289017 5.63098182 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 399 6.889999999999999e-107   NTclustered gi|225696248|gb|FJ805915.1| 259957 g6546 i0 95.935 148.756097560976 246 10 100 0 1 246 3546 3791 Uncultured Chroococcidiopsis sp. clone A1_1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 36594 399 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
1486822 1486822 PRJNA1103784_P_NODE_4322_length_275_cov_3.138614_g4267_i0 PRJNA1103784 4322 275 3.138614 8.6311885 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 335 2.24e-87   NTclustered gi|225696191|gb|FJ805858.1| 259957 g4267 i0 88.727 125.323636363636 275 30 100 1 1 275 1850 2123 Uncultured Chroococcidiopsis sp. clone AS1_2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 34464 335 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
2762842 2762842 PRJNA1103784_P_NODE_4183_length_278_cov_2.507317_g4128_i0 PRJNA1103784 4183 278 2.507317 6.97034126 Nostoc sp. UHCC 0702 2814655 Bacteria Bacteria 374 4.809999999999998e-99   NTclustered gi|1996588181|gb|CP071065.1| 2814655 g4128 i0 91.007 197.179856115108 278 24 100 1 1 278 570753 570477 Nostoc sp. UHCC 0702 chromosome, complete genome blastn 54816 374 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. UHCC 0702

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;