RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1103784" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1103784 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212130 212130 PRJNA1103784_P_NODE_1801_length_388_cov_1.222222_g1746_i0 PRJNA1103784 1801 388 1.222222 4.74222136 Cochliopodium minus 313997 Discosea other_Eukaryota 383 1.1599999999999998e-101   NTclustered gi|330902862|gb|JF298257.1| 313997 g1746 i0 90.847 28.6701030927835 295 13 73 9 104 388 1756 1466 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 11124 383 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
1486803 1486803 PRJNA1103784_P_NODE_3582_length_292_cov_1.406393_g3527_i0 PRJNA1103784 3582 292 1.406393 4.10666756 Cribraria violacea 1334538 Evosea other_Eukaryota 265 3.19e-66   NTclustered gi|501417113|gb|JX481322.1| 1334538 g3527 i0 84.815 79.208904109589 270 33 91 7 26 291 763 498 Cribraria violacea voucher AMFD172 elongation factor 1A (EF1A) gene, partial cds blastn 23129 265 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Liceales Cribrariaceae Cribraria Cribraria violacea
2762789 2762789 PRJNA1103784_P_NODE_1383_length_431_cov_1.407821_g1328_i0 PRJNA1103784 1383 431 1.407821 6.06770851 Cochliopodium minus 313997 Discosea other_Eukaryota 326 2.22e-84   NTclustered gi|330902862|gb|JF298257.1| 313997 g1328 i0 87.671 8.67285382830626 292 21 67 12 1 288 284 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 3738 326 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
4038942 4038942 PRJNA1103784_P_NODE_6984_length_245_cov_0.895349_g6929_i0 PRJNA1103784 6984 245 0.895349 2.19360505 Cochliopodium minus 313997 Discosea other_Eukaryota 405 1.47e-108   NTclustered gi|330902895|gb|JF298272.1| 313997 g6929 i0 96.708 63.0040816326531 243 8 99 0 3 245 774 532 Cochliopodium minus clone 5207 actin gene, partial cds blastn 15436 405 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
7864813 7864813 PRJNA1103784_P_NODE_2247_length_356_cov_11.038869_g2192_i0 PRJNA1103784 2247 356 11.038869 39.29837364 Ripella sp. 805 1217113 Discosea other_Eukaryota 556 5.86e-154   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g2192 i0 95.506 100.120786516854 356 2 100 6 1 356 901 560 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 35643 556 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
11690895 11690895 PRJNA1103784_P_NODE_90_length_1429_cov_3.897493_g64_i0 PRJNA1103784 90 1429 3.897493 55.69517497 Vannella septentrionalis 197531 Discosea other_Eukaryota 261 2.24e-64   NTclustered gi|300078499|gb|GU001161.1| 197531 g64 i0 76.493 21.4373687893632 536 92 37 27 145 671 1785 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30634 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
16789227 16789227 PRJNA1103784_P_NODE_1974_length_373_cov_1.746667_g1919_i0 PRJNA1103784 1974 373 1.746667 6.51506791 Cochliopodium minus 313997 Discosea other_Eukaryota 558 1.72e-154   NTclustered gi|330902862|gb|JF298257.1| 313997 g1919 i0 93.473 59.5120643431635 383 12 99 6 1 372 242 622 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 22198 558 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
16789341 16789341 PRJNA1103784_P_NODE_914_length_515_cov_8.877828_g859_i0 PRJNA1103784 914 515 8.877828 45.7208142 Ripella sp. 805 1217113 Discosea other_Eukaryota 798 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g859 i0 95.117 99.1980582524272 512 16 99 9 8 515 1 507 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 51087 798 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;