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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1102048 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1486356 1486356 PRJNA1102048_P_NODE_15222_length_246_cov_0.890173_g15118_i0 PRJNA1102048 15222 246 0.890173 2.18982558 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 52.8 0.022   NTclustered gi|937513727|gb|CP012850.1| 1353260 g15118 i0 100 0.113821138211382 28 0 11 0 21 48 1214781 1214754 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
6589890 6589890 PRJNA1102048_P_NODE_9446_length_285_cov_0.830189_g9342_i0 PRJNA1102048 9446 285 0.830189 2.36603865 Nitrosopumilus piranensis 1582439 Archaea Archaea 422 1.74e-113   NTclustered gi|756791811|gb|CP010868.1| 1582439 g9342 i0 93.333 2.88421052631579 285 19 100 0 1 285 215992 216276 Nitrosopumilus piranensis strain D3C chromosome, complete genome blastn 822 422 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus piranensis
9139309 9139309 PRJNA1102048_P_NODE_14368_length_248_cov_0.880000_g14264_i0 PRJNA1102048 14368 248 0.88 2.1824 uncultured archaeon 115547 Archaea Archaea 250 7.41e-62   NTclustered gi|223031559|gb|FJ351284.1| 115547 g14264 i0 94.969 73.8548387096774 159 8 99 0 2 160 697 539 Uncultured archaeon clone 060329_T2S2_S_T_SDP_275 small subunit ribosomal RNA gene, partial sequence blastn 18316 250 1 Archaea               uncultured archaeon
9139355 9139355 PRJNA1102048_P_NODE_2368_length_536_cov_0.993521_g2265_i0 PRJNA1102048 2368 536 0.993521 5.32527256 Halorussus caseinilyticus 3034025 Archaea Archaea 54.7 0.015   NTclustered gi|2463595565|gb|CP119811.1| 3034025 g2265 i0 100 0.21641791044776101 29 0 5 0 382 410 42645 42617 Halorussus caseinilyticus strain DT72 plasmid unnamed2, complete sequence blastn 116 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus caseinilyticus
18063407 18063407 PRJNA1102048_P_NODE_13055_length_250_cov_1.728814_g12951_i0 PRJNA1102048 13055 250 1.728814 4.322035 Nitrosopumilus sp. 2024843 Archaea Archaea 202 2.12e-47   NTclustered gi|2805380108|emb|OY763927.2| 2024843 g12951 i0 81.275 1.004 251 45 100 2 1 250 845575 845824 MAG: Nitrosopumilus sp. isolate e501d42f-d10b-4094-a589-3c4c61670bda genome assembly, chromosome: 1 blastn 251 202 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
19337510 19337510 PRJNA1102048_P_NODE_14696_length_247_cov_0.885057_g14592_i0 PRJNA1102048 14696 247 0.885057 2.18609079 Candidatus Nitrosopumilus sp. SW 2508726 Archaea Archaea 379 9.02e-101   NTclustered gi|1699461107|gb|CP035425.1| 2508726 g14592 i0 94.332 7.8663967611336 247 14 100 0 1 247 417625 417379 Candidatus Nitrosopumilus sp. SW chromosome, complete genome blastn 1943 379 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus sp. SW

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;