RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA1102048 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2762420 2762420 PRJNA1102048_P_NODE_15443_length_245_cov_1.750000_g15339_i0 PRJNA1102048 15443 245 1.75 4.2875 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 87.9 6.06e-13   NTclustered gi|695406607|ref|XM_009525859.1| 67593 g15339 i0 85.714 2.86938775510204 84 10 34 2 162 244 541 459 Phytophthora sojae hypothetical protein mRNA blastn 703 87.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
6589760 6589760 PRJNA1102048_P_NODE_1126_length_707_cov_2.219243_g1030_i0 PRJNA1102048 1126 707 2.219243 15.69004801 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 303 1.77e-77   NTclustered gi|669146817|ref|XM_008610749.1| 1156394 g1030 i0 79.185 7.90947666195191 466 75 65 15 72 532 621 173 Saprolegnia diclina VS20 40S ribosomal protein S8 mRNA blastn 5592 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
6589794 6589794 PRJNA1102048_P_NODE_15006_length_246_cov_0.971098_g14902_i0 PRJNA1102048 15006 246 0.971098 2.38890108 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 169 2.11e-37   NTclustered gi|673021649|ref|XM_008866564.1| 157072 g14902 i0 79.675 15.6219512195122 246 40 99 7 3 246 1185 948 Aphanomyces invadans hypothetical protein partial mRNA blastn 3843 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
7864475 7864475 PRJNA1102048_P_NODE_4547_length_400_cov_2.688073_g4443_i0 PRJNA1102048 4547 400 2.688073 10.752292 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 316 1.23e-81   NTclustered gi|695447497|ref|XM_009536456.1| 67593 g4443 i0 81.627 75.5925 381 70 95 0 19 399 1676 2056 Phytophthora sojae hypothetical protein mRNA blastn 30237 316 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7864492 7864492 PRJNA1102048_P_NODE_6907_length_329_cov_2.402344_g6803_i0 PRJNA1102048 6907 329 2.402344 7.90371176 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 207 6.24e-49   NTclustered gi|189083887|gb|BT031403.1| 4784 g6803 i0 84.434 55.1550151975684 212 31 64 2 1 211 352 142 Phytophthora capsici clone CBOT69-P12 mRNA sequence blastn 18146 207 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
10415188 10415188 PRJNA1102048_P_NODE_8249_length_303_cov_1.334783_g8145_i0 PRJNA1102048 8249 303 1.334783 4.04439249 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 167 9.66e-37   NTclustered gi|166035705|emb|CU351918.1| 100861 g8145 i0 77.133 36.4191419141914 293 63 96 4 12 302 539 249 Aphanomyces euteiches cDNA blastn 11035 167 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14240505 14240505 PRJNA1102048_P_NODE_2512_length_522_cov_39.576837_g2408_i0 PRJNA1102048 2512 522 39.576837 206.59108914 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.9999999999999995e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g2408 i0 80.533 64.8045977011494 375 65 70 4 29 396 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16788899 16788899 PRJNA1102048_P_NODE_5454_length_369_cov_1.016892_g5350_i0 PRJNA1102048 5454 369 1.016892 3.75233148 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 110 2.05e-19   NTclustered gi|813192155|ref|XM_012352570.1| 695850 g5350 i0 76.549 0.994579945799458 226 37 58 13 134 348 1042 822 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 367 110 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
18063496 18063496 PRJNA1102048_P_NODE_7635_length_314_cov_10.609959_g7531_i0 PRJNA1102048 7635 314 10.609959 33.31527126 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 267 9.64e-67   NTclustered gi|2289|emb|X59936.1| 4766 g7531 i0 87.179 72.343949044586 234 30 75 0 81 314 1 234 A.bisexualis gene for actin blastn 22716 267 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
19337470 19337470 PRJNA1102048_P_NODE_10816_length_269_cov_1.571429_g10712_i0 PRJNA1102048 10816 269 1.571429 4.22714401 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 178 3.9e-40   NTclustered gi|2794930130|ref|XM_067885621.1| 164328 g10712 i0 83.163 21.4237918215613 196 31 72 2 71 265 46 240 Phytophthora ramorum putative small nuclear ribonucleoprotein Sm D2 (KRP23_14762), partial mRNA blastn 5763 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
19337507 19337507 PRJNA1102048_P_NODE_14336_length_248_cov_0.880000_g14232_i0 PRJNA1102048 14336 248 0.88 2.1824 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 224 4.489999999999999e-54   NTclustered gi|675185260|ref|XM_008903267.1| 761204 g14232 i0 84.513 3.23790322580645 226 35 91 0 9 234 612 387 Phytophthora parasitica INRA-310 pyridoxal biosynthesis lyase pdxS mRNA blastn 803 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
19337569 19337569 PRJNA1102048_P_NODE_6616_length_336_cov_1.612167_g6512_i0 PRJNA1102048 6616 336 1.612167 5.41688112 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 307 6.13e-79   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g6512 i0 93.269 62.3541666666667 208 14 62 0 129 336 450 243 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 20951 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
21888527 21888527 PRJNA1102048_P_NODE_14178_length_248_cov_0.880000_g14074_i0 PRJNA1102048 14178 248 0.88 2.1824 Pythium sp. CHE-287 480030 SAR_Eukaryotes SAR_Eukaryotes 252 2.06e-62   NTclustered gi|158905788|gb|EU199087.1| 480030 g14074 i0 85.214 97.6370967741936 257 24 99 12 2 248 267 15 Pythium sp. CHE-287 translation elongation factor 1 alpha gene, partial cds blastn 24214 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. CHE-287
21888613 21888613 PRJNA1102048_P_NODE_6238_length_345_cov_2.150735_g6134_i0 PRJNA1102048 6238 345 2.150735 7.42003575 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 261 4.98e-65   NTclustered gi|2795024423|ref|XM_067938288.1| 4785 g6134 i0 81.481 77.5449275362319 324 54 93 6 3 323 1 321 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13598), partial mRNA blastn 26753 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23164076 23164076 PRJNA1102048_P_NODE_5499_length_367_cov_1.785714_g5395_i0 PRJNA1102048 5499 367 1.785714 6.55357038 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 222 2.51e-53   NTclustered gi|813184507|ref|XM_012351036.1| 695850 g5395 i0 87.065 23.9673024523161 201 20 54 4 122 319 336 139 Saprolegnia parasitica CBS 223.65 40S ribosomal protein mRNA blastn 8796 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
24437628 24437628 PRJNA1102048_P_NODE_16480_length_243_cov_1.064706_g16376_i0 PRJNA1102048 16480 243 1.064706 2.58723558 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 233 7.289999999999999e-57   NTclustered gi|813138583|ref|XM_012343405.1| 695850 g16376 i0 85.65 15.0123456790123 223 30 91 2 11 232 751 530 Saprolegnia parasitica CBS 223.65 tubulin alpha chain mRNA blastn 3648 233 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
25246364 25246364 PRJNA1102048_P_NODE_4160_length_418_cov_2.028986_g4056_i0 PRJNA1102048 4160 418 2.028986 8.48116148 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 289 2.8199999999999996e-73   NTclustered gi|23394400|gb|AF424664.1| 4787 g4056 i0 80.256 93.4545454545455 390 71 93 5 10 396 464 78 Phytophthora infestans clone MY-11-B-09 S-adenosyl methionine synthetase mRNA, complete cds blastn 39064 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;