RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1102048 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4848057 4848057 PRJNA1102048_P_NODE_7584_length_315_cov_2.933884_g7480_i0 PRJNA1102048 7584 315 2.933884 9.2417346 Caenorhabditis 6237 Nematoda Nematoda 63.9 1.36e-5   NTclustered gi|1972228534|ref|NM_001316854.4| 6239 g7480 i0 95 0.495238095238095 40 2 13 0 33 72 47 86 Caenorhabditis elegans 60S ribosomal protein L41 (rpl-41.2), mRNA blastn 156 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9948190 9948190 PRJNA1102048_P_NODE_8408_length_299_cov_3.628319_g8304_i0 PRJNA1102048 8408 299 3.628319 10.84867381 Metazoa 33208 Nematoda Nematoda 191 5.65e-44   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g8304 i0 81.435 163.227424749164 237 40 79 4 34 268 235 1 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 48805 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15514451 15514451 PRJNA1102048_P_NODE_9773_length_281_cov_1.326923_g9669_i0 PRJNA1102048 9773 281 1.326923 3.72865363 Micoletzkya palliati 1250334 Nematoda Nematoda 165 3.19e-36   NTclustered gi|410992319|gb|JX163988.1| 1250334 g9669 i0 84.118 3.90391459074733 170 27 60 0 65 234 170 1 Micoletzkya palliati large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 1097 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya palliati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;