RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1102048 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7397786 7397786 PRJNA1102048_P_NODE_12806_length_251_cov_0.865169_g12702_i0 PRJNA1102048 12806 251 0.865169 2.17157419 Metazoa 33208 Echinodermata other_Eukaryota 54.7 0.006   NTclustered gi|70887808|gb|AC165428.1| 7668 g12702 i0 94.444 1.41434262948207 36 0 14 1 126 159 481019 481054 Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence blastn 355 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
7397790 7397790 PRJNA1102048_P_NODE_14426_length_247_cov_2.643678_g14322_i0 PRJNA1102048 14426 247 2.643678 6.52988466 Metazoa 33208 Echinodermata other_Eukaryota 172 1.64e-38   NTclustered gi|2707444094|ref|XM_054906737.2| 7653 g14322 i0 80.909 59.7165991902834 220 40 89 2 29 247 147 365 PREDICTED: Lytechinus pictus ras-related C3 botulinum toxin substrate 1-like (LOC129269263), transcript variant X1, mRNA blastn 14750 172 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
10415102 10415102 PRJNA1102048_P_NODE_16369_length_243_cov_2.923529_g16265_i0 PRJNA1102048 16369 243 2.923529 7.10417547 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 128 3.54e-25   NTclustered gi|1752359748|ref|XM_030984758.1| 7668 g16265 i0 84.496 6.39506172839506 129 20 53 0 1 129 354 226 PREDICTED: Strongylocentrotus purpuratus NHP2-like protein 1 (LOC587294), mRNA blastn 1554 128 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;