RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1102048 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7864384 7864384 PRJNA1102048_P_NODE_12387_length_253_cov_1.650000_g12283_i0 PRJNA1102048 12387 253 1.65 4.1745 Cochliopodium minus 313997 Discosea other_Eukaryota 460 3.2199999999999996e-125   NTclustered gi|330902862|gb|JF298257.1| 313997 g12283 i0 99.605 82.4901185770751 253 0 100 1 1 253 493 242 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 20870 460 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
9139365 9139365 PRJNA1102048_P_NODE_3368_length_462_cov_1.755784_g3264_i0 PRJNA1102048 3368 462 1.755784 8.11172208 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 244 6.89e-60   NTclustered gi|470467440|ref|XM_004341747.1| 1257118 g3264 i0 77.75 2.50865800865801 400 87 86 2 64 462 19 417 Acanthamoeba castellanii str. Neff guanine nucleotide-binding protein beta subunit, putative (ACA1_199990), partial mRNA blastn 1159 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12965518 12965518 PRJNA1102048_P_NODE_12671_length_251_cov_0.865169_g12567_i0 PRJNA1102048 12671 251 0.865169 2.17157419 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 353 5.569999999999998e-93   NTclustered gi|470529577|ref|XM_004368039.1| 1257118 g12567 i0 92.653 9.23505976095618 245 18 98 0 5 249 491 247 Acanthamoeba castellanii str. Neff ribulosephosphate 3-epimerase (ACA1_291490), partial mRNA blastn 2318 353 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16788801 16788801 PRJNA1102048_P_NODE_11114_length_266_cov_1.378238_g11010_i0 PRJNA1102048 11114 266 1.378238 3.66611308 Cochliopodium minus 313997 Discosea other_Eukaryota 300 7.87e-77   NTclustered gi|330902862|gb|JF298257.1| 313997 g11010 i0 87.546 11.2857142857143 273 17 100 12 1 266 278 16 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 3002 300 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
16788807 16788807 PRJNA1102048_P_NODE_12034_length_256_cov_2.333333_g11930_i0 PRJNA1102048 12034 256 2.333333 5.97333248 Vannella septentrionalis 197531 Discosea other_Eukaryota 455 1.52e-123   NTclustered gi|300078499|gb|GU001161.1| 197531 g11930 i0 98.828 71.81640625 256 2 100 1 1 256 1641 1895 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18385 455 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18063500 18063500 PRJNA1102048_P_NODE_8275_length_302_cov_1.912664_g8171_i0 PRJNA1102048 8275 302 1.912664 5.77624528 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 180 1.24e-40   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g8171 i0 80.252 2.32119205298013 238 47 79 0 53 290 21 258 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 701 180 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19337512 19337512 PRJNA1102048_P_NODE_1476_length_635_cov_6.866548_g1376_i0 PRJNA1102048 1476 635 6.866548 43.6025798 Platyamoeba placida 3454475 Discosea other_Eukaryota 833 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g1376 i0 90.379 99.5165354330709 634 61 99 0 1 634 525 1158 Platyamoeba placida actin mRNA, partial cds blastn 63193 833 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
21888495 21888495 PRJNA1102048_P_NODE_11438_length_262_cov_3.523810_g11334_i0 PRJNA1102048 11438 262 3.52381 9.2323822 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 361 3.5e-95   NTclustered gi|300078498|gb|GU001160.1| 5755 g11334 i0 91.76 1.01908396946565 267 11 100 10 1 262 5925 5665 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 267 361 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21888641 21888641 PRJNA1102048_P_NODE_9718_length_281_cov_2.961538_g9614_i0 PRJNA1102048 9718 281 2.961538 8.32192178 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 141 5.37e-29   NTclustered gi|470423488|ref|XM_004337555.1| 1257118 g9614 i0 79.227 28.7686832740214 207 39 73 4 74 278 277 481 Acanthamoeba castellanii str. Neff ribosomal protein L23, putative (ACA1_164710), partial mRNA blastn 8084 141 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;