RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1102048 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6589849 6589849 PRJNA1102048_P_NODE_3666_length_445_cov_1.620968_g3562_i0 PRJNA1102048 3666 445 1.620968 7.2133076 Polychytrium aggregatum 110093 Fungi Fungi 209 2.4100000000000002e-49   NTclustered gi|2432157378|ref|XM_053107751.1| 110093 g3562 i0 77.198 16.7415730337079 364 79 81 4 47 408 182 543 Polychytrium aggregatum ribosomal protein L6, alpha-beta domain-containing protein (BJ171DRAFT_426015), partial mRNA blastn 7450 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
11690474 11690474 PRJNA1102048_P_NODE_6690_length_334_cov_2.245211_g6586_i0 PRJNA1102048 6690 334 2.245211 7.49900474 Polychytrium aggregatum 110093 Fungi Fungi 145 5.05e-30   NTclustered gi|2432158676|ref|XM_053113190.1| 110093 g6586 i0 76.866 61.8802395209581 268 54 79 6 4 267 13 276 Polychytrium aggregatum ribosomal protein S25 component of cytosolic 80S ribosome and 40S small subunit (BJ171DRAFT_559057), partial mRNA blastn 20668 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
12965647 12965647 PRJNA1102048_P_NODE_8271_length_302_cov_2.008734_g8167_i0 PRJNA1102048 8271 302 2.008734 6.06637668 Polychytrium aggregatum 110093 Fungi Fungi 206 2.04e-48   NTclustered gi|2432142886|ref|XM_053110559.1| 110093 g8167 i0 81.673 79.7847682119205 251 42 82 4 32 280 340 92 Polychytrium aggregatum 60S ribosomal protein L42 (BJ171DRAFT_500193), mRNA blastn 24095 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;