RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7864446 7864446 PRJNA1102048_P_NODE_18267_length_223_cov_6.666667_g18163_i0 PRJNA1102048 18267 223 6.666667 14.86666741 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 211 3.09e-50   NTclustered gi|2874254120|emb|OY970205.1| 194844 g18163 i0 84.305 3.8206278026905802 223 28 99 7 5 223 7041516 7041735 MAG: uncultured Acidobacteriaceae bacterium isolate MFD02248.bin.1.24 genome assembly, chromosome: 1 blastn 852 211 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
18063456 18063456 PRJNA1102048_P_NODE_17835_length_241_cov_0.916667_g17731_i0 PRJNA1102048 17835 241 0.916667 2.20916747 Acidobacteriota bacterium 1978231 Bacteria Bacteria 372 1.47e-98   NTclustered gi|2621701354|emb|OY760074.1| 1978231 g17731 i0 94.606 258.390041493776 241 12 100 1 1 241 1226749 1226510 MAG: Acidobacteriota bacterium isolate e8b00ceb-3b51-4674-b3e1-58c3ce2e7457 genome assembly, chromosome: 1 blastn 62272 372 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;