RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1102048" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1102048 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11690497 11690497 PRJNA1102048_P_NODE_990_length_744_cov_2.253353_g898_i0 PRJNA1102048 990 744 2.253353 16.76494632 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 104 2.03e-17   NTclustered gi|551538436|ref|XM_005757713.1| 280463 g898 i0 72.063 3.29435483870968 383 95 51 8 90 469 629 256 Emiliania huxleyi CCMP1516 60S ribosomal protein L10a partial mRNA blastn 2451 104 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
15047662 15047662 PRJNA1102048_P_NODE_10692_length_270_cov_2.918782_g10588_i0 PRJNA1102048 10692 270 2.918782 7.8807114 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 158 5.1e-34   NTclustered gi|551624794|ref|XM_005792543.1| 280463 g10588 i0 84.146 8.81111111111111 164 24 61 2 105 268 86 247 Emiliania huxleyi CCMP1516 40S ribosomal protein S14 partial mRNA blastn 2379 159 0.993710691823899 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;