RNAquarium Metadata Server
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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA1101946" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 15 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1101946 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485955 1485955 PRJNA1101946_S_NODE_6882_length_282_cov_5.278970_g6783_i0 PRJNA1101946 6882 282 5.27897 14.8866954 Pestivirus brazilense 3052620 Viruses Viruses 427 3.7e-115   NTclustered gi|2813517655|gb|PQ362005.1| 381707 g6783 i0 96.863 27.6382978723404 255 8 90 0 1 255 10053 10307 Bovine viral diarrhea virus 3 isolate HN2247, partial genome blastn 7794 427 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
2761939 2761939 PRJNA1101946_S_NODE_14643_length_210_cov_6.850932_g14544_i0 PRJNA1101946 14643 210 6.850932 14.3869572 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g14544 i0 100 0.671428571428571 29 0 14 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
4038015 4038015 PRJNA1101946_S_NODE_5504_length_303_cov_2.425197_g5405_i0 PRJNA1101946 5504 303 2.425197 7.34834691 Carlavirus latensdianthi 3427766 Viruses Viruses 52.8 0.028   NTclustered gi|1995060321|gb|MN450069.1| 12164 g5405 i0 100 0.0924092409240924 28 0 9 0 1 28 14 41 Carnation latent virus isolate KL, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
4038028 4038028 PRJNA1101946_S_NODE_8064_length_268_cov_4.105023_g7965_i0 PRJNA1101946 8064 268 4.105023 11.00146164 Carlavirus latensdianthi 3427766 Viruses Viruses 56.5 0.002   NTclustered gi|1995060321|gb|MN450069.1| 12164 g7965 i0 100 0.529850746268657 30 0 11 0 1 30 13 42 Carnation latent virus isolate KL, complete genome blastn 142 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
6589394 6589394 PRJNA1101946_S_NODE_4086_length_328_cov_6.150538_g3987_i0 PRJNA1101946 4086 328 6.150538 20.17376464 Pestivirus brazilense 3052620 Viruses Viruses 573 5.329999999999998e-159   NTclustered gi|2813517653|gb|PQ362004.1| 381707 g3987 i0 98.171 30.9298780487805 328 6 100 0 1 328 9865 9538 Bovine viral diarrhea virus 3 isolate HN2168, partial genome blastn 10145 573 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
6589407 6589407 PRJNA1101946_S_NODE_6646_length_285_cov_6.177966_g6547_i0 PRJNA1101946 6646 285 6.177966 17.6072031 Pestivirus brazilense 3052620 Viruses Viruses 494 3.64e-135   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g6547 i0 97.895 29.9754385964912 285 6 100 0 1 285 8166 7882 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 8543 494 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
7863943 7863943 PRJNA1101946_S_NODE_10667_length_241_cov_3.890625_g10568_i0 PRJNA1101946 10667 241 3.890625 9.37640625 Pestivirus brazilense 3052620 Viruses Viruses 409 1.12e-109   NTclustered gi|1569124192|gb|MH410816.1| 381707 g10568 i0 97.49 28.6514522821577 239 6 99 0 1 239 4337 4575 Bovine viral diarrhea virus 3 isolate LV03/12, complete genome blastn 6905 409 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
9138875 9138875 PRJNA1101946_S_NODE_18928_length_185_cov_2.867647_g18829_i0 PRJNA1101946 18928 185 2.867647 5.30514695 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.004   NTclustered gi|1995060321|gb|MN450069.1| 12164 g18829 i0 100 0.762162162162162 29 0 16 0 157 185 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
15513888 15513888 PRJNA1101946_S_NODE_13153_length_221_cov_3.761628_g13054_i0 PRJNA1101946 13153 221 3.761628 8.31319788 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.005   NTclustered gi|1995060321|gb|MN450069.1| 12164 g13054 i0 100 0.638009049773756 29 0 13 0 193 221 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
15513943 15513943 PRJNA1101946_S_NODE_8793_length_260_cov_2.658768_g8694_i0 PRJNA1101946 8793 260 2.658768 6.9127968 Pestivirus brazilense 3052620 Viruses Viruses 420 5.64e-113   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g8694 i0 95.769 28.9576923076923 260 11 100 0 1 260 4925 4666 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 7529 420 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
15513945 15513945 PRJNA1101946_S_NODE_9133_length_256_cov_3.942029_g9034_i0 PRJNA1101946 9133 256 3.942029 10.09159424 Pestivirus brazilense 3052620 Viruses Viruses 435 1.98e-117   NTclustered gi|2813517649|gb|PQ362002.1| 381707 g9034 i0 97.266 30.5703125 256 7 100 0 1 256 2532 2277 Bovine viral diarrhea virus 3 isolate HN2009, partial genome blastn 7826 435 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
19337073 19337073 PRJNA1101946_S_NODE_1796_length_408_cov_4.986072_g1697_i0 PRJNA1101946 1796 408 4.986072 20.34317376 Pestivirus brazilense 3052620 Viruses Viruses 662 0   NTclustered gi|2624695972|gb|OR827365.1| 381707 g1697 i0 96.278 29.9583333333333 403 15 99 0 1 403 8935 9337 Bovine viral diarrhea virus 3 isolate CNIM-2201, partial genome blastn 12223 662 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
20612475 20612475 PRJNA1101946_S_NODE_2877_length_359_cov_5.370968_g2778_i0 PRJNA1101946 2877 359 5.370968 19.28177512 Pestivirus brazilense 3052620 Viruses Viruses 608 1.609999999999999e-169   NTclustered gi|2624695972|gb|OR827365.1| 381707 g2778 i0 97.214 30.8941504178273 359 10 100 0 1 359 9293 8935 Bovine viral diarrhea virus 3 isolate CNIM-2201, partial genome blastn 11091 608 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
22696845 22696845 PRJNA1101946_S_NODE_20738_length_177_cov_1.335938_g20639_i0 PRJNA1101946 20738 177 1.335938 2.36461026 Pestivirus 11095 Viruses Viruses 263 6.349999999999999e-66   NTclustered gi|56067118|gb|AY735486.1| 266829 g20639 i0 98.649 74.3276836158192 148 2 84 0 24 171 324 471 Pestivirus strain D32/00_HoBi nonstructural protein (Npro) gene, partial cds blastn 13156 263 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus brazilense
24437170 24437170 PRJNA1101946_S_NODE_2960_length_357_cov_2.649351_g2861_i0 PRJNA1101946 2960 357 2.649351 9.45818307 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.009   NTclustered gi|1995060321|gb|MN450069.1| 12164 g2861 i0 100 0.394957983193277 29 0 8 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;