RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1101946" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1101946 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4037991 4037991 PRJNA1101946_S_NODE_224_length_777_cov_57.649725_g163_i0 PRJNA1101946 224 777 57.649725 447.93836325 Protostelium mycophagum 472931 Evosea other_Eukaryota 200 2.63e-46   NTclustered gi|290886108|gb|GU477644.1| 472931 g163 i0 97.436 12.1441441441441 117 3 15 0 31 147 748 864 Protostelium mycophagum strain HI04-85A-1b 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence blastn 9436 200 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
12965086 12965086 PRJNA1101946_S_NODE_10511_length_242_cov_43.823834_g10412_i0 PRJNA1101946 10511 242 43.823834 106.05367828 Protostelium mycophagum 472931 Evosea other_Eukaryota 351 1.92e-92   NTclustered gi|262262902|gb|FJ766445.1| 472931 g10412 i0 97.573 72.198347107438 206 3 85 2 26 230 1460 1664 Protostelium mycophagum strain KA-T02-1 small subunit ribosomal RNA gene, partial sequence blastn 17472 351 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
16788447 16788447 PRJNA1101946_S_NODE_8534_length_262_cov_13.338028_g8435_i0 PRJNA1101946 8534 262 13.338028 34.94563336 Protostelium mycophagum 472931 Evosea other_Eukaryota 414 2.65e-111   NTclustered gi|262262904|gb|FJ766447.1| 472931 g8435 i0 95.094 42.8931297709924 265 10 100 2 1 262 332 68 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 11238 414 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
19337050 19337050 PRJNA1101946_S_NODE_1076_length_474_cov_37.338824_g980_i0 PRJNA1101946 1076 474 37.338824 176.98602576 Protostelium mycophagum 472931 Evosea other_Eukaryota 540 8.07e-149   NTclustered gi|262262904|gb|FJ766447.1| 472931 g980 i0 90.261 39.1434599156118 421 30 87 11 36 449 977 561 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 18554 540 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
24437130 24437130 PRJNA1101946_S_NODE_10700_length_240_cov_86.209424_g10601_i0 PRJNA1101946 10700 240 86.209424 206.9026176 uncultured Variosea 2777566 Evosea other_Eukaryota 97.1 9.83e-16   NTclustered gi|2006880850|emb|HG995806.1| 2777566 g10601 i0 89.474 0.433333333333333 76 8 32 0 165 240 1535 1610 uncultured Variosea genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, clone 62615b63 blastn 104 97.1 1 Eukaryota Amoebozoa   Evosea Variosea       uncultured Variosea
24437203 24437203 PRJNA1101946_S_NODE_9680_length_250_cov_118.850746_g9581_i0 PRJNA1101946 9680 250 118.850746 297.126865 Protostelium mycophagum 472931 Evosea other_Eukaryota 350 7.17e-92   NTclustered gi|262262901|gb|FJ766444.1| 472931 g9581 i0 94.667 48.336 225 12 90 0 26 250 1252 1476 Protostelium mycophagum strain BRNFDF05-11A-3 small subunit ribosomal RNA gene, partial sequence blastn 12084 350 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;