RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1101946" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1101946 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4037971 4037971 PRJNA1101946_S_NODE_14184_length_213_cov_402.292683_g14085_i0 PRJNA1101946 14184 213 402.292683 856.88341479 Ceratomyxa verudensis 1579384 Cnidaria other_Eukaryota 82.4 2.39e-11   NTclustered gi|730837042|gb|KM392426.1| 1579384 g14085 i0 97.872 18.0046948356808 47 1 22 0 142 188 947 901 Ceratomyxa verudensis isolate 184 28S ribosomal RNA gene, partial sequence blastn 3835 82.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Ceratomyxidae Ceratomyxa Ceratomyxa verudensis
12965132 12965132 PRJNA1101946_S_NODE_6271_length_290_cov_23.721992_g6172_i0 PRJNA1101946 6271 290 23.721992 68.7937768 Actinia tenebrosa 6105 Cnidaria other_Eukaryota 52.8 0.027   NTclustered gi|1778042707|ref|XM_031703036.1| 6105 g6172 i0 100 0.289655172413793 28 0 10 0 209 236 3091 3118 PREDICTED: Actinia tenebrosa centromere protein K-like (LOC116295264), mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Actinia Actinia tenebrosa
18062948 18062948 PRJNA1101946_S_NODE_20895_length_176_cov_3.629921_g20796_i0 PRJNA1101946 20895 176 3.629921 6.38866096 Briareum asbestinum 86543 Cnidaria other_Eukaryota 52.8 0.015   NTclustered gi|2714796306|gb|PP584625.1| 86543 g20796 i0 100 0.159090909090909 28 0 16 0 149 176 52566 52593 Briareum asbestinum cytochrome P450 CYP3 cembrene 19-hydroxylase, cytochrome P450 CYP1, and SDH1 genes, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleralcyonacea Briareidae Briareum Briareum asbestinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;