contig_metadata
15 rows where analysis = "blastn", bioproject = "PRJNA1101946" and tax_phylum = "Actinomycetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1485934 | 1485934 | PRJNA1101946_S_NODE_22822_length_168_cov_7.596639_g22723_i0 | PRJNA1101946 | 22822 | 168 | 7.596639 | 12.76235352 | Mycobacterium intracellulare | 1767 | Bacteria | Bacteria | 56.5 | 0.001 | NTclustered | gi|1950639805|dbj|AP024248.1| | 1767 | g22723 | i0 | 97.059 | 0.202380952380952 | 34 | 0 | 20 | 1 | 71 | 103 | 1921768 | 1921735 | Mycobacterium intracellulare strain M008 | blastn | 34 | 56.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycobacterium | Mycobacterium intracellulare | ||
| 2761932 | 2761932 | PRJNA1101946_S_NODE_1103_length_470_cov_9.377672_g1007_i0 | PRJNA1101946 | 1103 | 470 | 9.377672 | 44.0750584 | Streptomyces sp. Je 1-332 | 3231270 | Bacteria | Bacteria | 52.8 | 0.046 | NTclustered | gi|2770570345|gb|CP160402.1| | 3231270 | g1007 | i0 | 92.105 | 0.0808510638297872 | 38 | 1 | 8 | 2 | 375 | 412 | 2923495 | 2923460 | Streptomyces sp. Je 1-332 chromosome, complete genome | blastn | 38 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces sp. Je 1-332 | ||
| 6589389 | 6589389 | PRJNA1101946_S_NODE_3586_length_339_cov_3.455172_g3487_i0 | PRJNA1101946 | 3586 | 339 | 3.455172 | 11.71303308 | Corynebacterium lizhenjunii | 2709394 | Bacteria | Bacteria | 52.8 | 0.032 | NTclustered | gi|1939561086|gb|CP064954.1| | 2709394 | g3487 | i0 | 100 | 0.0825958702064897 | 28 | 0 | 8 | 0 | 253 | 280 | 793889 | 793862 | Corynebacterium lizhenjunii strain ZJ-599 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium lizhenjunii | ||
| 7397676 | 7397676 | PRJNA1101946_S_NODE_10586_length_242_cov_2.595855_g10487_i0 | PRJNA1101946 | 10586 | 242 | 2.595855 | 6.2819691 | Cutibacterium | 1912216 | Bacteria | Bacteria | 385 | 1.89e-102 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g10487 | i0 | 100 | 62.6570247933884 | 208 | 0 | 86 | 0 | 1 | 208 | 1180484 | 1180277 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 15163 | 385 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 13773278 | 13773278 | PRJNA1101946_S_NODE_491_length_593_cov_13.454044_g409_i0 | PRJNA1101946 | 491 | 593 | 13.454044 | 79.78248092 | Cutibacterium | 1912216 | Bacteria | Bacteria | 1014 | 0 | NTclustered | gi|2548746222|gb|CP129004.1| | 1747 | g409 | i0 | 99.462 | 282.704890387858 | 558 | 3 | 94 | 0 | 21 | 578 | 608391 | 608948 | Cutibacterium acnes strain EASDk81B chromosome, complete genome | blastn | 167644 | 1014 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 13773300 | 13773300 | PRJNA1101946_S_NODE_951_length_489_cov_6.804545_g857_i0 | PRJNA1101946 | 951 | 489 | 6.804545 | 33.27422505 | Cutibacterium | 1912216 | Bacteria | Bacteria | 893 | 0 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g857 | i0 | 99.591 | 274.147239263804 | 489 | 2 | 100 | 0 | 1 | 489 | 56101 | 56589 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 134058 | 893 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 14240055 | 14240055 | PRJNA1101946_S_NODE_3992_length_330_cov_4.245552_g3893_i0 | PRJNA1101946 | 3992 | 330 | 4.245552 | 14.0103216 | Leucobacter aridicollis | 283878 | Bacteria | Bacteria | 521 | 1.9699999999999998e-143 | NTclustered | gi|2276937852|gb|CP075339.1| | 283878 | g3893 | i0 | 95.195 | 224.80303030303 | 333 | 10 | 100 | 6 | 1 | 330 | 666971 | 667300 | Leucobacter aridicollis strain J1 chromosome, complete genome | blastn | 74185 | 521 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Leucobacter | Leucobacter aridicollis | ||
| 16322398 | 16322398 | PRJNA1101946_S_NODE_26033_length_158_cov_2.440367_g25934_i0 | PRJNA1101946 | 26033 | 158 | 2.440367 | 3.85577986 | Corynebacterium | 1716 | Bacteria | Bacteria | 287 | 3.29e-73 | NTclustered | gi|2547420364|gb|CP073093.1| | 38304 | g25934 | i0 | 99.367 | 383.424050632911 | 158 | 1 | 100 | 0 | 1 | 158 | 293981 | 294138 | Corynebacterium tuberculostearicum strain CTNIH12 chromosome, complete genome | blastn | 60581 | 287 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium tuberculostearicum | ||
| 18871507 | 18871507 | PRJNA1101946_S_NODE_4475_length_320_cov_3.387454_g4376_i0 | PRJNA1101946 | 4475 | 320 | 3.387454 | 10.8398528 | Corynebacterium | 1716 | Bacteria | Bacteria | 592 | 1.4299999999999996e-164 | NTclustered | gi|2550471320|gb|CP100376.1| | 38284 | g4376 | i0 | 100 | 359.015625 | 320 | 0 | 100 | 0 | 1 | 320 | 2341320 | 2341001 | Corynebacterium accolens strain CA7 chromosome | blastn | 114885 | 592 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium accolens | ||
| 19337091 | 19337091 | PRJNA1101946_S_NODE_4036_length_329_cov_4.917857_g3937_i0 | PRJNA1101946 | 4036 | 329 | 4.917857 | 16.17974953 | Corynebacterium tuberculostearicum | 38304 | Bacteria | Bacteria | 608 | 1.4599999999999995e-169 | NTclustered | gi|1958382392|gb|CP068156.1| | 38304 | g3937 | i0 | 100 | 32.8905775075988 | 329 | 0 | 100 | 0 | 1 | 329 | 238647 | 238319 | Corynebacterium tuberculostearicum strain FDAARGOS_1117 chromosome, complete genome | blastn | 10821 | 608 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium tuberculostearicum | ||
| 20146320 | 20146320 | PRJNA1101946_S_NODE_9916_length_248_cov_8.924623_g9817_i0 | PRJNA1101946 | 9916 | 248 | 8.924623 | 22.13306504 | Microbacterium | 33882 | Bacteria | Bacteria | 453 | 5.2600000000000005e-123 | NTclustered | gi|2274432258|gb|CP101471.1| | 33918 | g9817 | i0 | 99.597 | 164 | 248 | 1 | 100 | 0 | 1 | 248 | 231065 | 230818 | Microbacterium maritypicum strain DND4 chromosome, complete genome | blastn | 40672 | 453 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium maritypicum | ||
| 20612488 | 20612488 | PRJNA1101946_S_NODE_5857_length_297_cov_4.318548_g5758_i0 | PRJNA1101946 | 5857 | 297 | 4.318548 | 12.82608756 | uncultured Actinomycetota bacterium | 3039803 | Bacteria | Bacteria | 233 | 9.180000000000001e-57 | NTclustered | gi|2874253930|emb|OY970255.1| | 3039803 | g5758 | i0 | 81.311 | 124.767676767677 | 305 | 42 | 100 | 13 | 1 | 297 | 2179475 | 2179772 | MAG: uncultured Actinomycetota bacterium isolate MFD01275.bin.2.2 genome assembly, chromosome: 1 | blastn | 37056 | 233 | 1 | Bacteria | Bacillati | Actinomycetota | uncultured Actinomycetota bacterium | ||||||
| 22696885 | 22696885 | PRJNA1101946_S_NODE_6738_length_284_cov_5.055319_g6639_i0 | PRJNA1101946 | 6738 | 284 | 5.055319 | 14.35710596 | Rathayibacter | 33886 | Bacteria | Bacteria | 520 | 5.98e-143 | NTclustered | gi|1004607163|gb|KT865871.1| | 1811327 | g6639 | i0 | 99.648 | 268.003521126761 | 284 | 1 | 100 | 0 | 1 | 284 | 239 | 522 | Rathayibacter sp. ALBL_219 23S ribosomal RNA gene, partial sequence | blastn | 76113 | 520 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Rathayibacter | Rathayibacter sp. ALBL_219 | ||
| 24437135 | 24437135 | PRJNA1101946_S_NODE_11560_length_233_cov_22.652174_g11461_i0 | PRJNA1101946 | 11560 | 233 | 22.652174 | 52.77956542 | Corynebacterium lizhenjunii | 2709394 | Bacteria | Bacteria | 52.8 | 0.021 | NTclustered | gi|1939561086|gb|CP064954.1| | 2709394 | g11461 | i0 | 100 | 0.120171673819742 | 28 | 0 | 12 | 0 | 60 | 87 | 793862 | 793889 | Corynebacterium lizhenjunii strain ZJ-599 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Corynebacteriaceae | Corynebacterium | Corynebacterium lizhenjunii | ||
| 25246262 | 25246262 | PRJNA1101946_S_NODE_340_length_672_cov_6.733547_g270_i0 | PRJNA1101946 | 340 | 672 | 6.733547 | 45.24943584 | Cutibacterium | 1912216 | Bacteria | Bacteria | 1173 | 0 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g270 | i0 | 99.382 | 258.188988095238 | 647 | 4 | 96 | 0 | 1 | 647 | 55997 | 55351 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 173503 | 1173 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;