RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1098727" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1098727 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
211098 211098 PRJNA1098727_P_NODE_14441_length_165_cov_0.896552_g14200_i0 PRJNA1098727 14441 165 0.896552 1.4793108 Candidatus Nitrospira inopinata 1715989 Bacteria Bacteria 291 2.69e-74   NTclustered gi|952974062|emb|LN885086.1| 1715989 g14200 i0 98.773 0.987878787878788 163 2 99 0 2 164 1555920 1555758 Nitrospira sp. ENR4 genome assembly NiCh1, chromosome : 1 blastn 163 291 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira inopinata
10414497 10414497 PRJNA1098727_P_NODE_15269_length_163_cov_0.912281_g15028_i0 PRJNA1098727 15269 163 0.912281 1.48701803 Nitrospira sp. 70125 Bacteria Bacteria 231 1.63e-56   NTclustered gi|2290906964|gb|CP058931.1| 70125 g15028 i0 92.547 1.97546012269939 161 12 99 0 2 162 2105690 2105850 MAG: Nitrospira sp. isolate DJ chromosome blastn 322 231 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19336872 19336872 PRJNA1098727_P_NODE_12876_length_169_cov_0.866667_g12635_i0 PRJNA1098727 12876 169 0.866667 1.46466723 Nitrospira defluvii 330214 Bacteria Bacteria 176 8.03e-40   NTclustered gi|300603458|emb|FP929003.1| 330214 g12635 i0 87.097 0.917159763313609 155 20 92 0 7 161 3996295 3996141 Candidatus Nitrospira defluvii chromosome, complete genome blastn 155 176 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;