RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1098727" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1098727 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6589221 6589221 PRJNA1098727_P_NODE_14626_length_164_cov_1.808696_g14385_i0 PRJNA1098727 14626 164 1.808696 2.96626144 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.004   NTclustered gi|840016890|emb|LK066393.1| 202946 g14385 i0 100 0.176829268292683 29 0 18 0 73 101 207577 207549 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
16788196 16788196 PRJNA1098727_P_NODE_11314_length_179_cov_7.161538_g11073_i0 PRJNA1098727 11314 179 7.161538 12.81915302 Camelus bactrianus 9837 Chordata Chordata 60.2 9.06e-5   NTclustered gi|2165480494|ref|XR_006721483.1| 9837 g11073 i0 97.143 2.21787709497207 35 1 20 0 144 178 1793 1759 PREDICTED: Camelus bactrianus uncharacterized LOC123614016 (LOC123614016), ncRNA blastn 397 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus bactrianus
21887900 21887900 PRJNA1098727_P_NODE_12718_length_169_cov_0.866667_g12477_i0 PRJNA1098727 12718 169 0.866667 1.46466723 Meleagris gallopavo 9103 Chordata Chordata 292 7.64e-75   NTclustered gi|2721460947|emb|HG999702.4| 9103 g12477 i0 98.78 1.79289940828402 164 2 97 0 1 164 3417222 3417385 Meleagris gallopavo genome assembly, chromosome: 23 blastn 303 292 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;