RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1098727" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1098727 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6122892 6122892 PRJNA1098727_P_NODE_12485_length_170_cov_1.702479_g12244_i0 PRJNA1098727 12485 170 1.702479 2.8942143 Haematococcus 44744 Plants Plants 313 5.91e-81   NTclustered gi|485073435|gb|KC196734.1| 44745 g12244 i0 100 99.8882352941176 169 0 99 0 1 169 2022 1854 Haematococcus lacustris isolate SAG 49.94 26S ribosomal RNA gene, partial sequence blastn 16981 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
7863794 7863794 PRJNA1098727_P_NODE_10407_length_188_cov_1.446043_g10166_i0 PRJNA1098727 10407 188 1.446043 2.71856084 Chloroidium lobatum 2250242 Plants Plants 342 8.539999999999999e-90   NTclustered gi|551363931|emb|HF586460.1| 2250242 g10166 i0 99.468 100.117021276596 188 1 100 0 1 188 241 54 Parachloroidium lobatum partial 18S rRNA gene, strain CAUP H8502 blastn 18822 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium lobatum
15513736 15513736 PRJNA1098727_P_NODE_14733_length_164_cov_0.904348_g14492_i0 PRJNA1098727 14733 164 0.904348 1.48313072 Desmochloris halophila 138176 Plants Plants 261 2.09e-65   NTclustered gi|371782123|emb|HE610155.1| 138176 g14492 i0 95.679 118.756097560976 162 7 99 0 2 163 1520 1681 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 19476 261 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;