RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA1098727" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

  • Sar · 13 ✖

bioproject 1

  • PRJNA1098727 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1485759 1485759 PRJNA1098727_P_NODE_13102_length_168_cov_0.873950_g12861_i0 PRJNA1098727 13102 168 0.87395 1.468236 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 226 7.859999999999997e-55   NTclustered gi|820695469|tpe|LN714488.1| 572307 g12861 i0 91.018 9.59523809523809 167 15 99 0 2 168 300435 300601 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1612 226 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
1485764 1485764 PRJNA1098727_P_NODE_13662_length_167_cov_0.881356_g13421_i0 PRJNA1098727 13662 167 0.881356 1.47186452 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 300 4.53e-77   NTclustered gi|166046560|emb|CU367677.1| 100861 g13421 i0 99.394 34.5808383233533 165 1 99 0 2 166 191 27 Aphanomyces euteiches cDNA blastn 5775 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
2761803 2761803 PRJNA1098727_P_NODE_14523_length_165_cov_0.896552_g14282_i0 PRJNA1098727 14523 165 0.896552 1.4793108 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 213 5.98e-51   NTclustered gi|829194196|ref|XM_001025062.3| 312017 g14282 i0 90.244 0.993939393939394 164 15 99 1 2 164 253 90 Tetrahymena thermophila SB210 40S ribosomal protein S24 partial mRNA blastn 164 213 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
4037808 4037808 PRJNA1098727_P_NODE_13324_length_168_cov_0.873950_g13083_i0 PRJNA1098727 13324 168 0.87395 1.468236 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 309 7.58e-80   NTclustered gi|325194231|emb|FR825088.1| 890382 g13083 i0 100 1.46428571428571 167 0 99 0 1 167 1254 1088 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 246 309 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5313977 5313977 PRJNA1098727_P_NODE_6425_length_247_cov_1.510101_g6184_i0 PRJNA1098727 6425 247 1.510101 3.72994947 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 444 3.15e-120   NTclustered gi|2589355395|ref|NC_077461.1| 29204 g6184 i0 99.187 199.072874493927 246 2 99 0 1 246 71465 71710 Cyclotella cryptica chloroplast, complete genome blastn 49171 444 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
6589194 6589194 PRJNA1098727_P_NODE_10806_length_184_cov_1.525926_g10565_i0 PRJNA1098727 10806 184 1.525926 2.80770384 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 309 8.430000000000001e-80   NTclustered gi|829174498|ref|XM_001017626.3| 312017 g10565 i0 97.253 7.92391304347826 182 5 99 0 2 183 511 330 Tetrahymena thermophila SB210 ubiquitin/ribosomal fusion protein, putative partial mRNA blastn 1458 309 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
6589212 6589212 PRJNA1098727_P_NODE_13846_length_166_cov_1.384615_g13605_i0 PRJNA1098727 13846 166 1.384615 2.2984609 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 176 7.91e-40   NTclustered gi|829160192|ref|XM_001012283.3| 312017 g13605 i0 89.362 1.36746987951807 141 13 84 2 2 141 68 207 Tetrahymena thermophila SB210 40S ribosomal protein S28e, putative partial mRNA blastn 227 176 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
7397623 7397623 PRJNA1098727_P_NODE_13706_length_167_cov_0.881356_g13465_i0 PRJNA1098727 13706 167 0.881356 1.47186452 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 307 2.71e-79   NTclustered gi|1621572405|gb|MH051920.1| 5893 g13465 i0 100 99.4011976047904 166 0 99 0 2 167 1280 1445 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 16600 307 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
7863811 7863811 PRJNA1098727_P_NODE_14287_length_165_cov_1.034483_g14046_i0 PRJNA1098727 14287 165 1.034483 1.70689695 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 292 7.47e-75   NTclustered gi|2589355395|ref|NC_077461.1| 29204 g14046 i0 98.78 146.678787878788 164 2 99 0 1 164 80209 80372 Cyclotella cryptica chloroplast, complete genome blastn 24202 292 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
12498631 12498631 PRJNA1098727_P_NODE_14190_length_165_cov_2.189655_g13949_i0 PRJNA1098727 14190 165 2.189655 3.61293075 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 291 2.69e-74   NTclustered gi|115353907|gb|DQ868347.1| 77619 g13949 i0 98.773 99.2181818181818 163 2 99 0 2 164 625 787 Vorticella microstoma 18S small subunit ribosomal RNA gene, partial sequence blastn 16371 291 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella microstoma
16788206 16788206 PRJNA1098727_P_NODE_12934_length_169_cov_0.866667_g12693_i0 PRJNA1098727 12934 169 0.866667 1.46466723 Spumella sp. OF-40 1432661 SAR_Eukaryotes SAR_Eukaryotes 237 3.63e-58   NTclustered gi|677286268|gb|KF997856.1| 1432661 g12693 i0 92.216 30.9289940828402 167 13 99 0 2 168 1255 1089 Spumella sp. OF-40 translation elongation factor 1-alpha (EF1A) mRNA, complete cds blastn 5227 237 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Spumella Spumella sp. OF-40
23163427 23163427 PRJNA1098727_P_NODE_14559_length_165_cov_0.896552_g14318_i0 PRJNA1098727 14559 165 0.896552 1.4793108 Stephanocyclus meneghinianus 29205 SAR_Eukaryotes SAR_Eukaryotes 276 7.52e-70   NTclustered gi|2728412634|gb|OR666648.1| 29205 g14318 i0 96.951 82 164 5 99 0 2 165 35096 35259 Stephanocyclus meneghinianus chloroplast, complete genome blastn 13530 276 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Stephanocyclus Stephanocyclus meneghinianus
25246174 25246174 PRJNA1098727_P_NODE_6260_length_251_cov_1.009901_g6019_i0 PRJNA1098727 6260 251 1.009901 2.53485151 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 296 9.52e-76   NTclustered gi|2728412634|gb|OR666648.1| 29205 g6019 i0 89.407 176.713147410359 236 24 94 1 2 237 69845 69611 Stephanocyclus meneghinianus chloroplast, complete genome blastn 44355 296 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Stephanocyclus Stephanocyclus meneghinianus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;