RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1097627" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1097627 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
202958 202958 PRJNA1097627_P_NODE_119661_length_262_cov_0.835979_g119368_i0 PRJNA1097627 119661 262 0.835979 2.19026498 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.024   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g119368 i0 100 0.106870229007634 28 0 11 0 202 229 65001139 65001166 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11683926 11683926 PRJNA1097627_P_NODE_164690_length_247_cov_0.885057_g164397_i0 PRJNA1097627 164690 247 0.885057 2.18609079 Mizuhopecten yessoensis 6573 Mollusca Mollusca 52.8 0.022   NTclustered gi|1207981855|ref|XR_002461893.1| 6573 g164397 i0 94.286 0.1417004048583 35 0 13 2 147 179 2964 2998 PREDICTED: Mizuhopecten yessoensis uncharacterized LOC110441628 (LOC110441628), ncRNA blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
20607964 20607964 PRJNA1097627_P_NODE_197937_length_242_cov_0.911243_g197644_i0 PRJNA1097627 197937 242 0.911243 2.20520806 Bradybaena similaris 145626 Mollusca Mollusca 65.8 2.8e-6   NTclustered gi|2912996298|dbj|AP039601.1| 145626 g197644 i0 88.889 0.223140495867769 54 4 22 2 103 156 52027274 52027223 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 20, sequence blastn 54 65.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;