RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1097627" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA1097627 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20603569 20603569 PRJNA1097627_P_NODE_107257_length_269_cov_1.336735_g106964_i0 PRJNA1097627 107257 269 1.336735 3.59581715 Tetraparvovirus ungulate1 3052771 Viruses Viruses 492 1.23e-134   NTclustered gi|2277478573|gb|MZ502236.1| 1096141 g106964 i0 99.628 16.907063197026 269 1 100 0 1 269 569 301 Bovine hokovirus 2 isolate BCS1/USA nonstructural protein, minor structural protein, and major structural protein genes, complete cds blastn 4548 492 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Tetraparvovirus Tetraparvovirus ungulate1
22696653 22696653 PRJNA1097627_P_NODE_10958_length_425_cov_1.156250_g10669_i0 PRJNA1097627 10958 425 1.15625 4.9140625 Betapolyomavirus 1891714 Viruses Viruses 774 0   NTclustered gi|13345942|gb|AF332562.1| 1891767 g10669 i0 99.529 106 425 2 100 0 1 425 3717 3293 Simian virus 40 strain 777, complete genome blastn 45050 780 0.992307692307692 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;