RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1097627" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1097627 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14235251 14235251 PRJNA1097627_P_NODE_191172_length_243_cov_0.905882_g190879_i0 PRJNA1097627 191172 243 0.905882 2.20129326 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 250 7.2399999999999995e-62   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g190879 i0 89.744 0.802469135802469 195 20 80 0 49 243 5290577 5290771 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 195 250 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
22696689 22696689 PRJNA1097627_P_NODE_160238_length_248_cov_0.880000_g159945_i0 PRJNA1097627 160238 248 0.88 2.1824 Gemmata 113 Bacteria Bacteria 318 1.9999999999999996e-82   NTclustered gi|1727537522|gb|CP042911.1| 114 g159945 i0 89.919 7.95564516129032 248 23 99 2 1 247 604795 604549 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 1973 318 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;