RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1095825" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1095825 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2750514 2750514 PRJNA1095825_P_NODE_142883_length_325_cov_0.916667_g139820_i0 PRJNA1095825 142883 325 0.916667 2.97916775 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 128 4.93e-25   NTclustered gi|24796128|gb|AY066584.1| 79327 g139820 i0 86.555 0.590769230769231 119 13 36 2 57 173 508 625 Schmidtea mediterranea clone H.106.10d unknown mRNA sequence blastn 192 128 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
7854509 7854509 PRJNA1095825_P_NODE_91147_length_397_cov_2.376543_g88084_i0 PRJNA1095825 91147 397 2.376543 9.43487571 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 669 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g88084 i0 97.927 0.972292191435768 386 8 97 0 1 386 39 424 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 386 669 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;