RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1095825" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1095825 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10404202 10404202 PRJNA1095825_P_NODE_263409_length_246_cov_1.780347_g260346_i0 PRJNA1095825 263409 246 1.780347 4.37965362 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 206 1.61e-48   NTclustered gi|2874254107|emb|OY970192.1| 412054 g260346 i0 84.541 15.7845528455285 207 32 84 0 1 207 1735090 1735296 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 3883 206 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10404542 10404542 PRJNA1095825_P_NODE_296989_length_241_cov_0.916667_g293926_i0 PRJNA1095825 296989 241 0.916667 2.20916747 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 248 2.58e-61   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g293926 i0 87.615 1.31120331950207 218 21 89 6 10 224 3124861 3125075 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 316 248 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
16777816 16777816 PRJNA1095825_P_NODE_243914_length_250_cov_0.870056_g240851_i0 PRJNA1095825 243914 250 0.870056 2.17514 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 182 2.769999999999999e-41   NTclustered gi|2874253789|emb|OY969773.1| 412054 g240851 i0 86.391 59.572 169 19 67 3 83 249 25618 25452 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 14893 182 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20601133 20601133 PRJNA1095825_P_NODE_169897_length_299_cov_2.690265_g166834_i0 PRJNA1095825 169897 299 2.690265 8.04389235 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 305 1.93e-78   NTclustered gi|2874253755|emb|OY969695.1| 412054 g166834 i0 85.813 8.68561872909699 289 40 96 1 1 288 254008 254296 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 2597 305 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21877763 21877763 PRJNA1095825_P_NODE_271458_length_245_cov_0.895349_g268395_i0 PRJNA1095825 271458 245 0.895349 2.19360505 Longimicrobiales bacterium 2910168 Bacteria Bacteria 167 7.57e-37   NTclustered gi|2893356056|emb|OZ220479.1| 2910168 g268395 i0 79.832 79.5551020408163 238 40 96 8 12 245 2782487 2782720 MAG: Longimicrobiales bacterium isolate ffc3e9c5-5d9e-49e8-9e51-7ae5a16491fe genome assembly, chromosome: 1 blastn 19491 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
23153437 23153437 PRJNA1095825_P_NODE_294599_length_241_cov_0.916667_g291536_i0 PRJNA1095825 294599 241 0.916667 2.20916747 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 272 1.5299999999999999e-68   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g291536 i0 87.879 89.0829875518672 231 28 96 0 4 234 1160692 1160462 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 21469 272 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;