RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1095825" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1095825 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2751512 2751512 PRJNA1095825_P_NODE_254923_length_248_cov_0.880000_g251860_i0 PRJNA1095825 254923 248 0.88 2.1824 Calyptraster sp. 3240086 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|2843360714|gb|PQ424520.1| 3240086 g251860 i0 100 0.112903225806452 28 0 11 0 218 245 15600 15627 Calyptraster sp. mitochondrion, partial genome blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Velatida Pterasteridae Calyptraster Calyptraster sp.
10404544 10404544 PRJNA1095825_P_NODE_297129_length_241_cov_0.916667_g294066_i0 PRJNA1095825 297129 241 0.916667 2.20916747 Acanthaster planci 133434 Echinodermata other_Eukaryota 58.4 4.66e-4   NTclustered gi|1229162798|ref|XM_022238692.1| 133434 g294066 i0 92.5 0.663900414937759 40 3 17 0 162 201 3018 3057 PREDICTED: Acanthaster planci uncharacterized LOC110981270 (LOC110981270), transcript variant X1, mRNA blastn 160 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;