RNAquarium Metadata Server
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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA1095825" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 14 ✖

bioproject 1

  • PRJNA1095825 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2750259 2750259 PRJNA1095825_P_NODE_108583_length_366_cov_1.720137_g105520_i0 PRJNA1095825 108583 366 1.720137 6.29570142 Picornaviridae sp. 1530251 Viruses Viruses 263 1.47e-65   NTclustered gi|2780183578|gb|PP818844.1| 1530251 g105520 i0 79.945 0.994535519125683 364 67 99 5 5 366 6769 6410 Picornaviridae sp. polyprotein and capsid protein genes, complete cds blastn 364 263 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.
2751487 2751487 PRJNA1095825_P_NODE_252103_length_248_cov_1.760000_g249040_i0 PRJNA1095825 252103 248 1.76 4.3648 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 433 6.86e-117   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g249040 i0 98.008 1.01209677419355 251 1 100 2 1 248 19 268 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 251 433 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1
4026644 4026644 PRJNA1095825_P_NODE_171124_length_298_cov_2.395556_g168061_i0 PRJNA1095825 171124 298 2.395556 7.13875688 Picornaviridae sp. 1530251 Viruses Viruses 285 2.51e-72   NTclustered gi|2780183578|gb|PP818844.1| 1530251 g168061 i0 83.893 1 298 48 100 0 1 298 3280 3577 Picornaviridae sp. polyprotein and capsid protein genes, complete cds blastn 298 285 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.
4026871 4026871 PRJNA1095825_P_NODE_195664_length_280_cov_0.821256_g192601_i0 PRJNA1095825 195664 280 0.821256 2.2995168 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 453 6.05e-123   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g192601 i0 96.057 0.996428571428571 279 10 99 1 3 280 1186 1464 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 279 453 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1
6577676 6577676 PRJNA1095825_P_NODE_135406_length_332_cov_1.710425_g132343_i0 PRJNA1095825 135406 332 1.710425 5.678611 brine shrimp iflavirus 3 2900464 Viruses Viruses 592 1.49e-164   NTclustered gi|2209094754|gb|OL472449.1| 2900464 g132343 i0 98.795 11 332 4 100 0 1 332 8991 8660 MAG: Brine shrimp iflavirus 3 isolate NM/94-18 RNA-dependent RNA polymerase gene, complete cds blastn 3652 592 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus brine shrimp iflavirus 3
7852678 7852678 PRJNA1095825_P_NODE_160307_length_308_cov_1.310638_g157244_i0 PRJNA1095825 160307 308 1.310638 4.03676504 Picornaviridae sp. 1530251 Viruses Viruses 547 3.0099999999999987e-151   NTclustered gi|2780183578|gb|PP818844.1| 1530251 g157244 i0 99.338 0.980519480519481 302 2 98 0 6 307 1872 1571 Picornaviridae sp. polyprotein and capsid protein genes, complete cds blastn 302 547 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.
7853854 7853854 PRJNA1095825_P_NODE_291907_length_242_cov_0.905325_g288844_i0 PRJNA1095825 291907 242 0.905325 2.1908865 Pestivirus bovis 3052619 Viruses Viruses 54.7 0.006   NTclustered gi|1169640532|emb|LT837585.1| 11099 g288844 i0 100 0.119834710743802 29 0 12 0 1 29 12189 12161 Bovine viral diarrhea virus 1 genome assembly, complete genome: monopartite blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
9127391 9127391 PRJNA1095825_P_NODE_130688_length_337_cov_2.272727_g127625_i0 PRJNA1095825 130688 337 2.272727 7.65908999 Betacoronavirus pandemicum 3418604 Viruses Viruses 54.7 0.009   NTclustered gi|2557392663|emb|OY660716.1| 2697049 g127625 i0 100 0.086053412462908 29 0 9 0 309 337 25724 25752 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11679708 11679708 PRJNA1095825_P_NODE_280390_length_244_cov_0.871345_g277327_i0 PRJNA1095825 280390 244 0.871345 2.1260818 Puccinia narnavirus B 2592749 Viruses Viruses 302 1.98e-77   NTclustered gi|1722559313|gb|MK231032.1| 2592749 g277327 i0 91.031 0.913934426229508 223 20 91 0 22 244 2265 2487 Puccinia narnavirus B isolate Won, partial genome blastn 223 302 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Puccinia narnavirus B
11679930 11679930 PRJNA1095825_P_NODE_30750_length_716_cov_1.945568_g27783_i0 PRJNA1095825 30750 716 1.945568 13.93026688 Picornaviridae sp. 1530251 Viruses Viruses 394 1.0299999999999999e-104   NTclustered gi|2780183578|gb|PP818844.1| 1530251 g27783 i0 77.04 1.00977653631285 723 142 99 22 3 714 7695 6986 Picornaviridae sp. polyprotein and capsid protein genes, complete cds blastn 723 394 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.
14228868 14228868 PRJNA1095825_P_NODE_186432_length_286_cov_1.474178_g183369_i0 PRJNA1095825 186432 286 1.474178 4.21614908 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 479 1.02e-130   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g183369 i0 96.864 1.0034965034965 287 8 100 1 1 286 444 730 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 287 479 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1
16776813 16776813 PRJNA1095825_P_NODE_133254_length_335_cov_1.000000_g130191_i0 PRJNA1095825 133254 335 1 3.35 Betacoronavirus pandemicum 3418604 Viruses Viruses 56.5 0.002   NTclustered gi|2557634435|emb|OY691424.1| 2697049 g130191 i0 96.97 0.0985074626865672 33 1 10 0 1 33 7580 7548 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 33 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18051711 18051711 PRJNA1095825_P_NODE_171455_length_298_cov_1.368889_g168392_i0 PRJNA1095825 171455 298 1.368889 4.07928922 brine shrimp iflavirus 3 2900464 Viruses Viruses 529 1.0499999999999996e-145   NTclustered gi|2209094746|gb|OL472445.1| 2900464 g168392 i0 98.658 11 298 4 100 0 1 298 7350 7053 MAG: Brine shrimp iflavirus 3 isolate KC/14 RNA-dependent RNA polymerase gene, complete cds blastn 3278 529 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus brine shrimp iflavirus 3
23152218 23152218 PRJNA1095825_P_NODE_158839_length_309_cov_1.953390_g155776_i0 PRJNA1095825 158839 309 1.95339 6.0359751 Picornaviridae sp. 1530251 Viruses Viruses 532 8.45e-147   NTclustered gi|2780183578|gb|PP818844.1| 1530251 g155776 i0 97.735 1 309 7 100 0 1 309 1254 946 Picornaviridae sp. polyprotein and capsid protein genes, complete cds blastn 309 532 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;