RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1095825" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA1095825 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4027789 4027789 PRJNA1095825_P_NODE_288144_length_242_cov_0.911243_g285081_i0 PRJNA1095825 288144 242 0.911243 2.20520806 Naegleria sp. 37103 Heterolobosea other_Eukaryota 448 2.3799999999999995e-121   NTclustered gi|2651357798|gb|PP174311.1| 37103 g285081 i0 100 11.9876033057851 242 0 100 0 1 242 3767 3526 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2901 448 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
5302468 5302468 PRJNA1095825_P_NODE_114845_length_357_cov_1.514085_g111782_i0 PRJNA1095825 114845 357 1.514085 5.40528345 Petalomonas acorensis 2529306 Euglenozoa other_Eukaryota 582 9.69e-162   NTclustered gi|1580982997|gb|MK564754.1| 2529306 g111782 i0 96.089 73.1708683473389 358 13 100 1 1 357 397 40 Petalomonas acorensis strain HFCC220 small subunit ribosomal RNA gene, partial sequence blastn 26122 582 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas acorensis
20600585 20600585 PRJNA1095825_P_NODE_103757_length_374_cov_1.408638_g100694_i0 PRJNA1095825 103757 374 1.408638 5.26830612 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 52.8 0.036   NTclustered gi|2031946548|emb|OD958517.1| 5763 g100694 i0 100 0.0748663101604278 28 0 7 0 347 374 28 1 Naegleria fowleri Karachi_NF001 strain blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
21877609 21877609 PRJNA1095825_P_NODE_254538_length_248_cov_0.880000_g251475_i0 PRJNA1095825 254538 248 0.88 2.1824 Leishmania major 5664 Euglenozoa other_Eukaryota 459 1.13e-124   NTclustered gi|157873427|ref|XM_001685173.1| 347515 g251475 i0 100 8 248 0 100 0 1 248 784 1031 Leishmania major strain Friedlin hypothetical protein partial mRNA blastn 1984 459 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
23153458 23153458 PRJNA1095825_P_NODE_296719_length_241_cov_0.916667_g293656_i0 PRJNA1095825 296719 241 0.916667 2.20916747 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.006   NTclustered gi|2031937359|emb|OD957219.1| 5763 g293656 i0 100 0.120331950207469 29 0 12 0 1 29 2 30 Naegleria fowleri Karachi_NF001 strain blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;