RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA1095825" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA1095825 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1019363 1019363 PRJNA1095825_P_NODE_201461_length_275_cov_1.940594_g198398_i0 PRJNA1095825 201461 275 1.940594 5.3366335 Didymium 5792 Evosea other_Eukaryota 344 3.72e-90   NTclustered gi|2687|emb|X60210.1| 5793 g198398 i0 89.493 7.80727272727273 276 24 99 4 1 274 1908 2180 D.iridis LSU rRNA gene blastn 2147 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
7854471 7854471 PRJNA1095825_P_NODE_86487_length_407_cov_11.167665_g83424_i0 PRJNA1095825 86487 407 11.167665 45.45239655 Vannella septentrionalis 197531 Discosea other_Eukaryota 549 1.1399999999999994e-151   NTclustered gi|300078499|gb|GU001161.1| 197531 g83424 i0 90.909 94.7321867321867 418 25 100 11 1 407 3829 3414 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 38556 549 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9128025 9128025 PRJNA1095825_P_NODE_208228_length_271_cov_1.116162_g205165_i0 PRJNA1095825 208228 271 1.116162 3.02479902 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 398 2.7699999999999993e-106   NTclustered gi|300078498|gb|GU001160.1| 5755 g205165 i0 92.657 17.9151291512915 286 5 100 12 1 271 6182 6466 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4855 398 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11678535 11678535 PRJNA1095825_P_NODE_153490_length_314_cov_1.917012_g150427_i0 PRJNA1095825 153490 314 1.917012 6.01941768 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 315 3.39e-81   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g150427 i0 86.301 30.8694267515924 292 36 92 3 3 292 2655 2944 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9693 315 1 Eukaryota Amoebozoa             Amoebozoa sp.
13773010 13773010 PRJNA1095825_P_NODE_45011_length_572_cov_15.981964_g41960_i0 PRJNA1095825 45011 572 15.981964 91.41683408 Vannella 95228 Discosea other_Eukaryota 1027 0   NTclustered gi|62865934|gb|AY929909.1| 325075 g41960 i0 99.126 99.1695804195804 572 4 100 1 1 572 15 585 Vannella sp. strain 4362V/II 18S small subunit ribosomal RNA gene, partial sequence blastn 56725 1035 0.992270531400966 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4362V/II
17597398 17597398 PRJNA1095825_P_NODE_57674_length_501_cov_1.306075_g54613_i0 PRJNA1095825 57674 501 1.306075 6.54343575 Didymium 5792 Evosea other_Eukaryota 525 2.399999999999999e-144   NTclustered gi|2687|emb|X60210.1| 5793 g54613 i0 85.658 27.4710578842315 509 61 100 10 1 501 2845 2341 D.iridis LSU rRNA gene blastn 13763 525 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
18052888 18052888 PRJNA1095825_P_NODE_297535_length_241_cov_0.916667_g294472_i0 PRJNA1095825 297535 241 0.916667 2.20916747 Didymium nigripes 75757 Evosea other_Eukaryota 246 9.27e-61   NTclustered gi|10443803|gb|AF239230.1|AF239230 75757 g294472 i0 88.614 61.6804979253112 202 23 84 0 1 202 1038 837 Didymium nigripes small subunit ribosomal RNA gene, partial sequence blastn 14865 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium nigripes
19325679 19325679 PRJNA1095825_P_NODE_159436_length_309_cov_1.271186_g156373_i0 PRJNA1095825 159436 309 1.271186 3.92796474 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 460 4.05e-125   NTclustered gi|300078498|gb|GU001160.1| 5755 g156373 i0 93.354 1.02265372168285 316 14 100 5 1 309 5926 5611 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 316 460 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21877528 21877528 PRJNA1095825_P_NODE_245018_length_250_cov_0.870056_g241955_i0 PRJNA1095825 245018 250 0.870056 2.17514 Ripella platypodia 2047821 Discosea other_Eukaryota 398 2.5199999999999997e-106   NTclustered gi|1269228347|gb|MF683472.1| 2047821 g241955 i0 95.294 99.868 255 5 100 5 1 250 399 147 Ripella platypodia clone 21701 18S ribosomal RNA gene, partial sequence blastn 24967 398 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;