RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1093380" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1093380 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7851938 7851938 PRJNA1093380_P_NODE_67_length_1655_cov_1.948799_g46_i0 PRJNA1093380 67 1655 1.948799 32.25262345 uncultured crenarchaeote 29281 Archaea Archaea 2772 0   NTclustered gi|42557759|emb|AJ627422.1| 29281 g46 i0 96.917 99.0761329305136 1654 51 99 0 1 1654 41643 43296 Uncultured crenarchaeote genomic fragment 54d9 blastn 163971 2772 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
9947449 9947449 PRJNA1093380_P_NODE_7068_length_279_cov_1.082524_g6962_i0 PRJNA1093380 7068 279 1.082524 3.02024196 Thermoproteati 1783275 Archaea Archaea 399 7.969999999999998e-107   NTclustered gi|42557759|emb|AJ627422.1| 29281 g6962 i0 92.5 21.494623655914 280 19 99 2 2 279 41363 41084 Uncultured crenarchaeote genomic fragment 54d9 blastn 5997 401 0.99501246882793 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
17596991 17596991 PRJNA1093380_P_NODE_474_length_820_cov_1.965194_g381_i0 PRJNA1093380 474 820 1.965194 16.1145908 Archaea 2157 Archaea Archaea 1448 0   NTclustered gi|42557759|emb|AJ627422.1| 29281 g381 i0 98.537 66.919512195122 820 12 100 0 1 820 40897 41716 Uncultured crenarchaeote genomic fragment 54d9 blastn 54874 1448 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
21421265 21421265 PRJNA1093380_P_NODE_12277_length_250_cov_1.740113_g12171_i0 PRJNA1093380 12277 250 1.740113 4.3502825 Nitrososphaeraceae 1033997 Archaea Archaea 307 4.3800000000000005e-79   NTclustered gi|765560203|gb|KP308704.1| 115547 g12171 i0 89.069 141.896 247 27 99 0 4 250 5545 5299 Uncultured archaeon clone RBG_13_scaffold_41842 genomic sequence blastn 35474 307 1 Archaea               uncultured archaeon
25245583 25245583 PRJNA1093380_P_NODE_17140_length_241_cov_0.916667_g17034_i0 PRJNA1093380 17140 241 0.916667 2.20916747 Nitrososphaera 497726 Archaea Archaea 351 1.91e-92   NTclustered gi|300521484|gb|GU797787.1| 497727 g17034 i0 92.975 25.5311203319502 242 15 100 2 1 241 1874 1634 Candidatus Nitrososphaera gargensis 23S ribosomal RNA gene, partial sequence blastn 6153 351 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera gargensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;