RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1093380" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1093380 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2749846 2749846 PRJNA1093380_P_NODE_1723_length_428_cov_2.030986_g1617_i0 PRJNA1093380 1723 428 2.030986 8.69262008 Chondromyces crocatus 52 Bacteria Bacteria 446 1.62e-120   NTclustered gi|908353314|gb|CP012159.1| 52 g1617 i0 85.584 145.014018691589 437 49 100 13 1 428 1431422 1430991 Chondromyces crocatus strain Cm c5, complete genome blastn 62066 446 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
6577140 6577140 PRJNA1093380_P_NODE_66_length_1686_cov_4.172970_g45_i0 PRJNA1093380 66 1686 4.17297 70.3562742 Minicystis rosea 888845 Bacteria Bacteria 2054 0   NTclustered gi|1127353251|gb|CP016211.1| 888845 g45 i0 88.68 188.622775800712 1705 165 100 27 1 1686 13716766 13715071 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 318018 2054 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
10402450 10402450 PRJNA1093380_P_NODE_3049_length_345_cov_1.750000_g2943_i0 PRJNA1093380 3049 345 1.75 6.0375 Labilithrix luteola 1391654 Bacteria Bacteria 566 9.429999999999997e-157   NTclustered gi|913610804|gb|CP012333.1| 1391654 g2943 i0 96.232 146.365217391304 345 13 100 0 1 345 7090220 7089876 Labilithrix luteola strain DSM 27648, complete genome blastn 50496 566 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
16776243 16776243 PRJNA1093380_P_NODE_1814_length_420_cov_3.544669_g1708_i0 PRJNA1093380 1814 420 3.544669 14.8876098 Anaeromyxobacter paludicola 2918171 Bacteria Bacteria 89.8 3.08e-13   NTclustered gi|2199271117|dbj|AP025592.1| 2918171 g1708 i0 94.737 4.87380952380952 57 3 14 0 361 417 1383558 1383614 Anaeromyxobacter paludicola DNA, complete genome blastn 2047 89.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola
16776282 16776282 PRJNA1093380_P_NODE_4814_length_295_cov_1.387387_g4708_i0 PRJNA1093380 4814 295 1.387387 4.09279165 Chondromyces crocatus 52 Bacteria Bacteria 302 2.46e-77   NTclustered gi|169977285|emb|AM946600.1| 52 g4708 i0 86.411 94.9152542372881 287 25 95 12 17 295 1510 1790 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 28000 302 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
16776291 16776291 PRJNA1093380_P_NODE_5574_length_288_cov_1.074419_g5468_i0 PRJNA1093380 5574 288 1.074419 3.09432672 Labilithrix luteola 1391654 Bacteria Bacteria 405 1.78e-108   NTclustered gi|913610804|gb|CP012333.1| 1391654 g5468 i0 92.014 145.427083333333 288 23 100 0 1 288 7090153 7090440 Labilithrix luteola strain DSM 27648, complete genome blastn 41883 405 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
23971550 23971550 PRJNA1093380_P_NODE_539_length_765_cov_3.822254_g444_i0 PRJNA1093380 539 765 3.822254 29.2402431 Myxococcia 32015 Bacteria Bacteria 996 0   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g444 i0 90.196 141.473202614379 765 73 100 2 1 765 443423 444185 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 108227 1003 0.993020937188435 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;