RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1093380" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1093380 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11677781 11677781 PRJNA1093380_P_NODE_2530_length_368_cov_1.542373_g2424_i0 PRJNA1093380 2530 368 1.542373 5.67593264 Isotricha intestinalis 47897 SAR_Eukaryotes SAR_Eukaryotes 235 3.23e-57   NTclustered gi|92790151|emb|AJ965261.1| 47897 g2424 i0 85.841 63.0815217391304 226 26 61 6 145 368 915 694 Isotricha intestinalis partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 23214 235 1 Eukaryota Sar   Ciliophora Litostomatea Vestibuliferida Isotrichidae Isotricha Isotricha intestinalis
12952894 12952894 PRJNA1093380_P_NODE_17811_length_228_cov_3.561290_g17705_i0 PRJNA1093380 17811 228 3.56129 8.1197412 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 303 5.08e-78   NTclustered gi|158347525|gb|EU047814.1| 151077 g17705 i0 91.071 97.5833333333333 224 20 98 0 2 225 16 239 Chilodonella uncinata clone Shared_P1 beta-tubulin gene, partial cds; macronuclear blastn 22249 303 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
25245570 25245570 PRJNA1093380_P_NODE_1500_length_453_cov_2.810526_g1395_i0 PRJNA1093380 1500 453 2.810526 12.73168278 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 407 8.129999999999999e-109   NTclustered gi|161734|gb|L01415.1|TETBTUBUA 5911 g1395 i0 83.002 95.9911699779249 453 73 99 4 3 453 950 1400 Tetrahymena thermophila beta-tubulin (BTU1) gene, complete cds blastn 43484 407 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;