RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1093380" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA1093380 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4025802 4025802 PRJNA1093380_P_NODE_224_length_1178_cov_3.090498_g165_i0 PRJNA1093380 224 1178 3.090498 36.40606644 Haematococcus lacustris 44745 Plants Plants 1267 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g165 i0 86.406 371.60441426146 1177 139 99 19 10 1178 2669 3832 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 437750 1267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
15501744 15501744 PRJNA1093380_P_NODE_1193_length_505_cov_3.166667_g1090_i0 PRJNA1093380 1193 505 3.166667 15.99166835 Haematococcus lacustris 44745 Plants Plants 665 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g1090 i0 90.818 424.60198019802 501 41 99 4 6 505 4371 3875 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 214424 665 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
19324781 19324781 PRJNA1093380_P_NODE_12396_length_250_cov_0.870056_g12290_i0 PRJNA1093380 12396 250 0.870056 2.17514 Chlamydomonas reinhardtii 3055 Plants Plants 161 3.61e-35   NTclustered gi|2082254498|ref|XM_043065527.1| 3055 g12290 i0 79.661 3.692 236 39 91 4 10 236 2783 3018 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g389986v5), mRNA blastn 923 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23151342 23151342 PRJNA1093380_P_NODE_11479_length_253_cov_1.583333_g11373_i0 PRJNA1093380 11479 253 1.583333 4.00583249 Auxenochlorella pyrenoidosa 3078 Plants Plants 468 1.92e-127   NTclustered gi|1768906865|gb|MN128434.1| 3078 g11373 i0 100 6.24505928853755 253 0 100 0 1 253 99890 100142 Auxenochlorella pyrenoidosa isolate FACHB-5 chloroplast, complete genome blastn 1580 468 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;