RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1093380" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1093380 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1019172 1019172 PRJNA1093380_P_NODE_2821_length_355_cov_1.386525_g2715_i0 PRJNA1093380 2821 355 1.386525 4.92216375 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 346 1.38e-90   NTclustered gi|470237391|ref|XM_004350602.1| 261658 g2715 i0 84.27 98.7746478873239 356 54 100 2 1 355 603 249 Cavenderia fasciculata actin (DFA_11706), partial mRNA blastn 35065 346 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
1473644 1473644 PRJNA1093380_P_NODE_12782_length_249_cov_1.750000_g12676_i0 PRJNA1093380 12782 249 1.75 4.3575 Dictyostelium purpureum 5786 Evosea other_Eukaryota 145 3.61e-30   NTclustered gi|330803819|ref|XM_003289852.1| 5786 g12676 i0 79.524 1.68674698795181 210 37 83 6 12 218 762 968 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_80649), partial mRNA blastn 420 145 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
4025828 4025828 PRJNA1093380_P_NODE_5004_length_292_cov_1.406393_g4898_i0 PRJNA1093380 5004 292 1.406393 4.10666756 Physarum polycephalum 5791 Evosea other_Eukaryota 401 2.3299999999999993e-107   NTclustered gi|3221|emb|V01159.1| 5791 g4898 i0 93.091 25.527397260274 275 18 94 1 3 276 1080 1354 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 7454 401 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;