RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1093008" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1093008 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6576466 6576466 PRJNA1093008_S_NODE_43906_length_305_cov_1.659483_g43579_i0 PRJNA1093008 43906 305 1.659483 5.06142315 Rohdeia mirabilis 2528008 Bacteria Bacteria 436 6.719999999999999e-118   NTclustered gi|1712658140|gb|CP036290.1| 2528008 g43579 i0 92.557 128.170491803279 309 16 100 6 1 305 3892973 3893278 Planctomycetes bacterium Pla163 chromosome, complete genome blastn 39092 436 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Rohdeia Rohdeia mirabilis
9947189 9947189 PRJNA1093008_S_NODE_46968_length_299_cov_2.500000_g46641_i0 PRJNA1093008 46968 299 2.5 7.475 Planctomycetia 203683 Bacteria Bacteria 401 2.3999999999999993e-107   NTclustered gi|2874254106|emb|OY970189.1| 100233 g46641 i0 94.595 158.996655518395 259 14 87 0 1 259 4317940 4318198 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 47540 403 0.995037220843672 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;