RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1093008" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1093008 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8672401 8672401 PRJNA1093008_S_NODE_9267_length_453_cov_3.631579_g8942_i0 PRJNA1093008 9267 453 3.631579 16.45105287 root 1 Root_unresolved Root_unresolved 813 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g8942 i0 99.553 98.6754966887417 447 1 98 1 1 446 698469 698023 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 44700 813 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
21421128 21421128 PRJNA1093008_S_NODE_64437_length_272_cov_1.482412_g64110_i0 PRJNA1093008 64437 272 1.482412 4.03216064 root 1 Root_unresolved Root_unresolved 71.3 6.89e-8   NTclustered gi|2222034613|gb|CP094108.1| 210 g64110 i0 92.157 18.6948529411765 51 2 19 2 3 53 685132 685180 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 5085 71.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
21875634 21875634 PRJNA1093008_S_NODE_70798_length_263_cov_3.647368_g70471_i0 PRJNA1093008 70798 263 3.647368 9.59257784 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.024   NTclustered gi|1474785413|gb|CP032101.1| 505249 g70471 i0 100 0.106463878326996 28 0 11 0 139 166 1771291 1771318 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
23971304 23971304 PRJNA1093008_S_NODE_39279_length_315_cov_1.475207_g38952_i0 PRJNA1093008 39279 315 1.475207 4.64690205 root 1 Root_unresolved Root_unresolved 80.5 1.35e-10   NTclustered gi|2222034613|gb|CP094108.1| 210 g38952 i0 92.857 15.9650793650794 56 2 18 1 260 315 685180 685127 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 5029 80.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;