RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1093008" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA1093008 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
198769 198769 PRJNA1093008_S_NODE_69341_length_265_cov_2.437500_g69014_i0 PRJNA1093008 69341 265 2.4375 6.459375 Allovahlkampfia sp. S35YCH 2919519 Heterolobosea other_Eukaryota 396 9.71e-106   NTclustered gi|2199280130|dbj|LC683687.1| 2919519 g69014 i0 93.585 59.1471698113208 265 17 100 0 1 265 624 888 Allovahlkampfia sp. S35YCH gene for 18S ribosomal RNA, partial sequence blastn 15674 396 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. S35YCH
10401740 10401740 PRJNA1093008_S_NODE_19689_length_375_cov_3.314570_g19362_i0 PRJNA1093008 19689 375 3.31457 12.4296375 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 536 8.079999999999997e-148   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g19362 i0 95.308 23.3573333333333 341 11 91 5 25 364 3879 4215 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8759 536 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12952703 12952703 PRJNA1093008_S_NODE_89491_length_245_cov_1.883721_g89164_i0 PRJNA1093008 89491 245 1.883721 4.61511645 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 335 1.9599999999999992e-87   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g89164 i0 94.495 27.0857142857143 218 10 89 2 26 242 4186 4402 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6636 335 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
20599716 20599716 PRJNA1093008_S_NODE_55877_length_284_cov_2.293839_g55550_i0 PRJNA1093008 55877 284 2.293839 6.51450276 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 353 6.42e-93   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g55550 i0 89.123 17.4471830985915 285 30 100 1 1 284 2371 2087 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4955 353 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;