RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1093008" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1093008 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8672410 8672410 PRJNA1093008_S_NODE_95267_length_241_cov_1.833333_g94940_i0 PRJNA1093008 95267 241 1.833333 4.41833253 Acanthamoeba 5754 Discosea other_Eukaryota 403 5.199999999999998e-108   NTclustered gi|328751298|gb|JF437606.1| 5755 g94940 i0 100 91.0497925311203 218 0 90 0 1 218 227 10 Acanthamoeba castellanii strain T17c3 18S ribosomal RNA gene, partial sequence blastn 21943 403 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16775444 16775444 PRJNA1093008_S_NODE_101574_length_208_cov_8.429630_g101247_i0 PRJNA1093008 101574 208 8.42963 17.5336304 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 84.2 6.46e-12   NTclustered gi|145386791|gb|EF216916.1| 136459 g101247 i0 88.406 34.5288461538462 69 8 33 0 1 69 1006 938 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 7182 84.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;