RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1092581 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
195755 195755 PRJNA1092581_P_NODE_110221_length_240_cov_2.209581_g109688_i0 PRJNA1092581 110221 240 2.209581 5.3029944 Thermodesulfomicrobium sp. WS 3004129 Bacteria Bacteria 383 6.74e-102   NTclustered gi|2416254156|dbj|AP027130.1| 3004129 g109688 i0 99.526 192.3 211 0 88 1 20 230 2038503 2038294 Thermodesulfomicrobium sp. WS DNA, complete genome blastn 46152 383 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Thermodesulfomicrobium Thermodesulfomicrobium sp. WS
1017651 1017651 PRJNA1092581_P_NODE_10221_length_846_cov_11.015524_g9786_i0 PRJNA1092581 10221 846 11.015524 93.19133304 Nitratidesulfovibrio 2802295 Bacteria Bacteria 1474 0   NTclustered gi|2431395895|gb|CP116246.1| 881 g9786 i0 99.385 6.25886524822695 813 5 96 0 16 828 3050475 3049663 Nitratidesulfovibrio vulgaris strain L2 chromosome, complete genome blastn 5295 1485 0.992592592592593 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris
7396588 7396588 PRJNA1092581_P_NODE_89446_length_270_cov_5.345178_g88913_i0 PRJNA1092581 89446 270 5.345178 14.4319806 Pseudomonadati 3379134 Bacteria Bacteria 206 1.7999999999999998e-48   NTclustered gi|779731694|gb|CP010430.1| 35554 g88913 i0 84.804 3.01851851851852 204 31 76 0 39 242 872462 872259 Geobacter sulfurreducens strain AM-1 genome blastn 815 206 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
7848518 7848518 PRJNA1092581_P_NODE_115387_length_231_cov_2.974684_g114854_i0 PRJNA1092581 115387 231 2.974684 6.87152004 Desulfomicrobium sp. ZS1 2952228 Bacteria Bacteria 363 8.4e-96   NTclustered gi|2269306666|gb|CP100351.1| 2952228 g114854 i0 99.015 192.922077922078 203 1 88 1 8 210 2625207 2625408 Desulfomicrobium sp. ZS1 chromosome, complete genome blastn 44565 363 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium sp. ZS1
11675629 11675629 PRJNA1092581_P_NODE_44570_length_406_cov_6.627628_g44037_i0 PRJNA1092581 44570 406 6.627628 26.90816968 Syntrophotalea acetylenica 29542 Bacteria Bacteria 54.7 0.011   NTclustered gi|1109565244|gb|CP015455.1| 29542 g44037 i0 96.875 0.157635467980296 32 1 8 0 33 64 603304 603335 Syntrophotalea acetylenica strain DSM 3246 chromosome, complete genome blastn 64 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea acetylenica
12949304 12949304 PRJNA1092581_P_NODE_105411_length_246_cov_1.283237_g104878_i0 PRJNA1092581 105411 246 1.283237 3.15676302 Geotalea uraniireducens 351604 Bacteria Bacteria 52.8 0.022   NTclustered gi|146395585|gb|CP000698.1| 351605 g104878 i0 100 0.113821138211382 28 0 11 0 134 161 1184303 1184276 Geobacter uraniireducens Rf4, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
19322712 19322712 PRJNA1092581_P_NODE_44656_length_406_cov_2.627628_g44123_i0 PRJNA1092581 44656 406 2.627628 10.66816968 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 257 7.69e-64   NTclustered gi|2893358418|emb|OZ220710.1| 2202153 g44123 i0 79.467 0.923645320197044 375 67 91 10 20 388 4188920 4189290 MAG: Thermodesulfobacteriota bacterium isolate dce1034a-8f23-488c-aa07-39e6c80a0035 genome assembly, chromosome: 1 blastn 375 257 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
21874527 21874527 PRJNA1092581_P_NODE_72898_length_305_cov_8.331897_g72365_i0 PRJNA1092581 72898 305 8.331897 25.41228585 Desulfovibrio piger 901 Bacteria Bacteria 501 2.35e-137   NTclustered gi|2548467271|emb|OX636706.1| 901 g72365 i0 98.929 8.9672131147541 280 3 92 0 21 300 1318488 1318209 Desulfovibrio piger isolate DSM32187 genome assembly, chromosome: 1 blastn 2735 501 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;