RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1092581 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12951463 12951463 PRJNA1092581_P_NODE_74231_length_302_cov_5.183406_g73698_i0 PRJNA1092581 74231 302 5.183406 15.65388612 Nitrospira sp. 70125 Bacteria Bacteria 499 8.35e-137   NTclustered gi|2511640680|gb|CP126121.1| 70125 g73698 i0 98.925 110.592715231788 279 3 92 0 20 298 201905 201627 MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome blastn 33399 499 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
18047418 18047418 PRJNA1092581_P_NODE_109155_length_241_cov_3.553571_g108622_i0 PRJNA1092581 109155 241 3.553571 8.56410611 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 187 5.699999999999998e-43   NTclustered gi|2449729286|gb|CP114553.1| 2927580 g108622 i0 83.756 134.800829875519 197 32 82 0 23 219 1674903 1675099 MAG: Candidatus Manganitrophus sp. isolate GAC1 chromosome, complete genome blastn 32487 187 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
22694738 22694738 PRJNA1092581_P_NODE_115098_length_231_cov_9.063291_g114565_i0 PRJNA1092581 115098 231 9.063291 20.93620221 Pseudomonadati 3379134 Bacteria Bacteria 353 5.05e-93   NTclustered gi|3451272|emb|Y14638.1| 70125 g114565 i0 99.485 83.982683982684 194 1 84 0 14 207 1187 994 Nitrospira sp. 16S rRNA gene, strain RC19 blastn 19400 353 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
25244337 25244337 PRJNA1092581_P_NODE_13880_length_739_cov_4.055556_g13393_i0 PRJNA1092581 13880 739 4.055556 29.97055884 Nitrospira 1234 Bacteria Bacteria 1147 0   NTclustered gi|922305621|gb|CP011801.1| 42253 g13393 i0 95.417 110.97699594046 720 33 97 0 20 739 1277767 1278486 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 82012 1147 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;