RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1092581" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1092581 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
197584 197584 PRJNA1092581_P_NODE_68201_length_317_cov_10.840164_g67668_i0 PRJNA1092581 68201 317 10.840164 34.36331988 Heterostelium album 2086695 Evosea other_Eukaryota 141 6.16e-29   NTclustered gi|1160553880|ref|XM_020572765.1| 670386 g67668 i0 85.714 3.68769716088328 133 19 42 0 21 153 143 275 Polysphondylium pallidum PN500 cytochrome c (cytC), partial mRNA blastn 1169 141 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
1471133 1471133 PRJNA1092581_P_NODE_27402_length_531_cov_4.886463_g26870_i0 PRJNA1092581 27402 531 4.886463 25.94711853 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 510 7.1499999999999995e-140   NTclustered gi|426281760|gb|JX681133.1| 1048528 g26870 i0 88.889 77.7645951035782 414 46 78 0 118 531 6 419 Stemonitopsis subcaespitosa actin gene, partial cds blastn 41293 510 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
7850517 7850517 PRJNA1092581_P_NODE_78407_length_292_cov_19.059361_g77874_i0 PRJNA1092581 78407 292 19.059361 55.65333412 Cavenderia fasciculata 261658 Evosea other_Eukaryota 78.7 4.47e-10   NTclustered gi|470236133|ref|XM_004349965.1| 261658 g77874 i0 86.111 0.246575342465753 72 10 25 0 6 77 888 959 Cavenderia fasciculata G beta like protein (gpbB), partial mRNA blastn 72 78.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
10399768 10399768 PRJNA1092581_P_NODE_25289_length_553_cov_12.304167_g24761_i0 PRJNA1092581 25289 553 12.304167 68.04204351 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 396 2.18e-105   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g24761 i0 82.851 29.493670886076 484 41 82 29 11 466 7032 6563 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16310 396 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
11676728 11676728 PRJNA1092581_P_NODE_88370_length_272_cov_5.040201_g87837_i0 PRJNA1092581 88370 272 5.040201 13.70934672 Didymium iridis 5793 Evosea other_Eukaryota 244 3.8399999999999996e-60   NTclustered gi|2687|emb|X60210.1| 5793 g87837 i0 88.67 13.0772058823529 203 19 74 4 72 272 5257 5057 D.iridis LSU rRNA gene blastn 3557 244 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
14226449 14226449 PRJNA1092581_P_NODE_73892_length_303_cov_3.834783_g73359_i0 PRJNA1092581 73892 303 3.834783 11.61939249 Arcyria sp. 'tenuissima' 3129282 Evosea other_Eukaryota 412 1.1199999999999997e-110   NTclustered gi|2698738389|gb|PP491458.1| 3129282 g73359 i0 92.708 0.95049504950495 288 17 94 2 1 284 3856 3569 Arcyria sp. 'tenuissima' voucher sc32644 internal transcribed spacer region, partial sequence blastn 288 412 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria sp. 'tenuissima'
15499167 15499167 PRJNA1092581_P_NODE_28433_length_520_cov_103.310962_g27901_i0 PRJNA1092581 28433 520 103.310962 537.2170024 Physarum cinereum 289951 Evosea other_Eukaryota 859 0   NTclustered gi|374255699|emb|HE614599.1| 289951 g27901 i0 98.367 91.6019230769231 490 6 94 2 12 501 1752 1265 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 47633 859 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
19322890 19322890 PRJNA1092581_P_NODE_51956_length_372_cov_3.561873_g51423_i0 PRJNA1092581 51956 372 3.561873 13.25016756 Didymium iridis 5793 Evosea other_Eukaryota 344 5.21e-90   NTclustered gi|2687|emb|X60210.1| 5793 g51423 i0 85.503 24.7043010752688 338 39 90 8 20 354 687 1017 D.iridis LSU rRNA gene blastn 9190 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
20598777 20598777 PRJNA1092581_P_NODE_74337_length_302_cov_3.235808_g73804_i0 PRJNA1092581 74337 302 3.235808 9.77214016 Didymium clavus 289976 Evosea other_Eukaryota 490 5.03e-134   NTclustered gi|381139240|emb|HE655047.1| 289976 g73804 i0 97.88 59.9569536423841 283 6 94 0 20 302 1012 1294 Didymium clavus partial 28S rRNA gene, isolate It-IG45 blastn 18107 490 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium clavus
20599159 20599159 PRJNA1092581_P_NODE_89357_length_270_cov_10.294416_g88824_i0 PRJNA1092581 89357 270 10.294416 27.7949232 Entamoeba gingivalis 38877 Evosea other_Eukaryota 351 2.1799999999999995e-92   NTclustered gi|2425687086|gb|OQ225454.1| 38877 g88824 i0 98.98 71.1555555555556 196 2 73 0 1 196 196 1 Entamoeba gingivalis isolate IH_ST2 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 19212 351 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
21873720 21873720 PRJNA1092581_P_NODE_41758_length_422_cov_2.931232_g41225_i0 PRJNA1092581 41758 422 2.931232 12.36979904 Physarum polycephalum 5791 Evosea other_Eukaryota 569 9.069999999999996e-158   NTclustered gi|15284027|dbj|AB070525.1| 5791 g41225 i0 92.327 51.0260663507109 404 26 95 5 1 401 465 64 Physarum polycephalum ub1 mRNA for ubiquitin 1, complete cds blastn 21533 569 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
22694713 22694713 PRJNA1092581_P_NODE_112538_length_236_cov_2.509202_g112005_i0 PRJNA1092581 112538 236 2.509202 5.92171672 Didymiaceae 1115745 Evosea other_Eukaryota 147 9.44e-31   NTclustered gi|116010585|emb|AM407430.1| 290853 g112005 i0 89.655 3.72881355932203 116 10 49 2 27 141 1915 2029 Lepidoderma carestianum partial 26S rRNA gene, isolate K18 blastn 880 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Lepidoderma Lepidoderma carestianum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;